| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,013,366 | (C)5→6 | coding (138/1659 nt) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,013,361 | 1 | . | C | 99.6% | 1099.2 / NA | 271 | A45P (GCC→CCC) | fliF | flagellar basal‑body MS‑ring and collar protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (126/143); minor base A (1/0); total (128/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 304 total aligned reads displayed.
GAGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑CCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCGCTTC > NC_000913/2013262‑2013456 | gAGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑c < 2:3370414/101‑1 (MQ=255)gAGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑c > 2:3371017/1‑101 (MQ=255) aGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cc < 1:3370308/101‑1 (MQ=255) gTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccc > 1:3371018/1‑101 (MQ=255) tGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cccc < 2:3370480/101‑1 (MQ=255) ggCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccccc < 2:3370855/101‑1 (MQ=255) gCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cccccc < 2:3370213/101‑2 (MQ=255) gCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cccccc < 2:3370383/101‑2 (MQ=255) gCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cccccc < 1:3370581/101‑2 (MQ=255) gCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑cccccc < 1:3370483/101‑2 (MQ=255) cTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccccccg < 2:3370423/101‑3 (MQ=255) cTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccccccg > 2:3371023/1‑99 (MQ=255) cTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccccccg < 1:3370458/101‑3 (MQ=255) ttAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑ccccccga < 2:3370074/101‑4 (MQ=255) aTCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTa > 1:3371028/1‑101 (MQ=255) aTCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTa < 2:3370353/101‑1 (MQ=255) cGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTAcc < 2:3370472/101‑1 (MQ=255) gCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCg > 1:3371032/1‑101 (MQ=255) gCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCg < 1:3370673/101‑1 (MQ=255) ccTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGc < 2:3370439/101‑1 (MQ=255) cTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGca < 1:3370333/101‑1 (MQ=255) cTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGca > 2:3371035/1‑101 (MQ=255) cTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGca < 1:3370657/101‑1 (MQ=255) tgcgtgcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGcac < 1:3370395/101‑1 (MQ=255) gcgtgcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGcaca < 2:3370662/101‑1 (MQ=255) gtgcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACatt > 1:3371040/1‑101 (MQ=255) tgcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACatta < 1:3370430/101‑1 (MQ=255) tgcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACatta < 1:3370469/101‑1 (MQ=255) gcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCCCTGATCCTGTGGGCGAAAGCCCCCCGACTACCGca < 2:3370323/95‑1 (MQ=255) gcgAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACattat > 2:3371043/1‑101 (MQ=255) gAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTc < 1:3370515/101‑1 (MQ=255) gAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTc > 2:3371047/1‑101 (MQ=255) gAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTc < 1:3370524/101‑1 (MQ=255) aaTCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGACCCCCGACTACCGCACATTATTCa > 1:3371049/1‑101 (MQ=255) tCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGTCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGc < 2:3370542/101‑1 (MQ=255) ccGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCa > 2:3371052/1‑101 (MQ=255) cGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCaa < 2:3370714/101‑1 (MQ=255) gAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAAt > 1:3371055/1‑101 (MQ=255) aaaaTTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATc > 1:3371058/1‑101 (MQ=255) aaaTTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCt > 2:3371062/1‑101 (MQ=255) aaTTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCtt < 1:3370378/101‑1 (MQ=255) aTTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCttt > 1:3371065/1‑101 (MQ=255) tCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTcc > 1:3371069/1‑101 (MQ=255) ccATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCCCATTATTCAGCAATCTTTCCg > 2:3371071/1‑101 (MQ=255) ccATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCg < 1:3370391/101‑1 (MQ=255) attgattgTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGAt < 1:3370567/101‑1 (MQ=255) tgattgTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCa > 2:3371075/1‑101 (MQ=255) gattgTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAg > 1:3371078/1‑101 (MQ=255) attgTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAgg > 2:3371081/1‑101 (MQ=255) ttgttgCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGa > 1:3371083/1‑101 (MQ=255) gttgCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGAtg > 1:3371086/1‑101 (MQ=255) gCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGAtggtg > 1:3371089/1‑101 (MQ=255) cGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgc < 2:3370596/101‑1 (MQ=255) cGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgc > 1:3371093/1‑101 (MQ=255) ggTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgcg < 1:3370641/101‑1 (MQ=255) gTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgcgc > 1:3371097/1‑101 (MQ=255) gTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgcgc > 2:3371098/1‑101 (MQ=255) ttCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCa < 2:3370968/101‑1 (MQ=255) tCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCaa > 2:3371102/1‑101 (MQ=255) ccGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAAt < 1:3370500/101‑1 (MQ=255) gcgGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTg < 2:3370444/101‑1 (MQ=255) cgGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAAtt > 1:3371107/1‑99 (MQ=255) cgGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGt > 2:3371106/1‑101 (MQ=255) gCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCa > 2:3371112/1‑101 (MQ=255) gCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCa < 2:3370585/101‑1 (MQ=255) cAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAg > 1:3371114/1‑101 (MQ=255) aGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGAtg > 1:3371117/1‑84 (MQ=255) ggCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCaa > 1:3371121/1‑101 (MQ=255) gCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAAc < 1:3370610/101‑1 (MQ=255) ggTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTg > 1:3371124/1‑101 (MQ=255) gTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGa < 2:3370459/101‑1 (MQ=255) cATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACg < 2:3370429/101‑1 (MQ=255) cATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACg > 2:3371126/1‑101 (MQ=255) aTGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGcaca < 1:3370449/46‑1 (MQ=39) tGGTCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCa > 1:3371128/1‑101 (MQ=255) tCGCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAAt < 1:3370408/101‑1 (MQ=255) gCACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGa > 2:3371132/1‑101 (MQ=255) cACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGaa < 1:3370819/101‑1 (MQ=255) cACTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGaa > 1:3371136/1‑101 (MQ=255) aCTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAat < 2:3370291/101‑1 (MQ=255) aCTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAat < 1:3370221/101‑1 (MQ=255) cTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAata < 1:3370690/101‑1 (MQ=255) cTGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAata > 2:3371139/1‑101 (MQ=255) tGATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAatat > 1:3371142/1‑101 (MQ=255) gATCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATAtt > 2:3371144/1‑101 (MQ=255) aTCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTc > 1:3371148/1‑101 (MQ=255) aTCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTc < 2:3370703/101‑1 (MQ=255) tCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTcc < 2:3370766/101‑1 (MQ=255) tCCTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTcc < 2:3370521/101‑1 (MQ=255) cgtgtgGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCaa < 1:3370792/87‑1 (MQ=255) ccTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCa < 1:3370547/75‑1 (MQ=255) ccTGTGGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCt < 2:3370616/101‑1 (MQ=255) tgtgGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTa > 2:3371151/1‑101 (MQ=255) gtgGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTAc < 2:3370636/101‑1 (MQ=255) tgGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTAcc < 1:3370856/101‑1 (MQ=255) tgGGCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTAcc > 2:3371155/1‑101 (MQ=255) gggCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCg > 1:3371156/1‑101 (MQ=255) gCGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCGCt < 2:3370563/101‑1 (MQ=255) cGAAAGCCCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCGCtt < 1:3370628/101‑1 (MQ=255) acg‑CCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGgc < 2:3370508/51‑1 (MQ=255) | GAGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGTTGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAG‑CCCCCGACTACCGCACATTATTCAGCAATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCGCTTC > NC_000913/2013262‑2013456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |