| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,018,530 | (C)6→7 | coding (145/1128 nt) | fliK → | flagellar hook‑length control protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,018,524 | 1 | . | C | 99.2% | 1084.6 / ‑0.5 | 267 | coding (139/1128 nt) | fliK | flagellar hook‑length control protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (143/122); total (143/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 296 total aligned reads displayed.
CACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTG > NC_000913/2018424‑2018619 | caccaccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCgg > 2:3379478/1‑101 (MQ=255) caccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccc < 2:3378925/101‑1 (MQ=255) ccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccc < 2:3378783/101‑1 (MQ=255) cacaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccc > 1:3379481/1‑101 (MQ=255) caTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccccca > 2:3379482/1‑99 (MQ=255) caTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccccca < 1:3379085/101‑3 (MQ=255) caTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGAAGGCGAGACAACTACCGACAAAGCgg < 2:3379147/93‑1 (MQ=255) aTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccccag < 2:3378939/101‑4 (MQ=255) ttGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccccagt < 2:3379054/101‑5 (MQ=255) tGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccccagtt > 2:3379486/1‑96 (MQ=255) gCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccc > 1:3379488/1‑92 (MQ=255) cTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCt > 1:3379491/1‑101 (MQ=255) tGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCtg > 2:3379493/1‑101 (MQ=255) ggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCtggtgg > 2:3379500/1‑101 (MQ=255) ggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCtggtgg > 1:3379498/1‑101 (MQ=255) cAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCa > 1:3379503/1‑101 (MQ=255) aaaGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCaa > 2:3379507/1‑101 (MQ=255) aaGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAAc > 1:3379509/1‑101 (MQ=255) cAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGAt > 1:3379514/1‑101 (MQ=255) cAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGAt > 2:3379517/1‑101 (MQ=255) aGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATa > 2:3379522/1‑101 (MQ=255) aGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATa > 1:3379520/1‑101 (MQ=255) cGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAg < 2:3378949/101‑1 (MQ=255) gATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGc < 1:3378477/101‑1 (MQ=255) aTGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGcc > 1:3379525/1‑101 (MQ=255) aTGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGcc > 2:3379527/1‑101 (MQ=255) tgctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGccc < 2:3379133/101‑1 (MQ=255) gctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCa > 1:3379532/1‑101 (MQ=255) gctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCa > 2:3379533/1‑101 (MQ=255) ctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCAc < 2:3379023/101‑1 (MQ=255) ctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCAc < 2:3379151/101‑1 (MQ=255) ctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCAc < 1:3379036/101‑1 (MQ=255) ctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCAc < 1:3379077/101‑1 (MQ=255) gcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGa < 1:3379166/101‑1 (MQ=255) caAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACaa > 2:3379538/1‑101 (MQ=255) caAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACaa < 2:3379087/101‑1 (MQ=255) aGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACaaaa < 2:3379177/101‑1 (MQ=255) aGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACaaaa > 1:3379539/1‑101 (MQ=255) gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAg < 1:3379155/101‑1 (MQ=255) gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAg > 2:3379542/1‑101 (MQ=255) gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAg < 2:3379012/101‑1 (MQ=255) aTTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAgg < 2:3379281/101‑1 (MQ=255) ttttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGc < 1:3379064/101‑1 (MQ=255) ttttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGc > 2:3379545/1‑101 (MQ=255) ttttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGc < 1:3379067/101‑1 (MQ=255) ttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCAc > 2:3379550/1‑89 (MQ=255) ttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGa < 1:3379108/101‑1 (MQ=255) ttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGa < 2:3379193/101‑1 (MQ=255) tctcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAg > 1:3379551/1‑101 (MQ=255) ctcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAg > 2:3379554/1‑100 (MQ=255) tcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGcc < 1:3378915/101‑1 (MQ=255) cgcgTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCg > 2:3379557/1‑101 (MQ=255) cgTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCt > 2:3379561/1‑101 (MQ=255) gttgttGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGcc < 2:3379231/97‑1 (MQ=255) gttgttGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg > 1:3379568/1‑101 (MQ=255) gttgttGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg > 1:3379565/1‑101 (MQ=255) tgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGAt < 1:3379025/101‑1 (MQ=255) tgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGAt > 2:3379570/1‑101 (MQ=255) tgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccccca > 1:3379572/1‑51 (MQ=255) tgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAg < 1:3379171/101‑1 (MQ=255) tgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAg < 2:3379097/101‑1 (MQ=255) tgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAg > 1:3379575/1‑101 (MQ=255) gAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGc > 2:3379578/1‑101 (MQ=255) cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATaa > 1:3379581/1‑67 (MQ=255) cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGat < 1:3379245/101‑1 (MQ=255) aaGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGatat > 2:3379586/1‑101 (MQ=255) aaGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGatat > 1:3379587/1‑101 (MQ=255) gCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTg < 1:3379072/101‑1 (MQ=255) gCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTg > 1:3379592/1‑101 (MQ=255) cATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGAt < 1:3379056/90‑1 (MQ=255) cATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGt > 2:3379593/1‑101 (MQ=255) cATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGt < 1:3378834/101‑1 (MQ=255) aGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTcc < 2:3379118/101‑1 (MQ=255) aGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTcc > 1:3379597/1‑101 (MQ=255) gCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg < 2:3379103/82‑1 (MQ=255) gCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCg < 1:3378739/101‑1 (MQ=255) gCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCg > 2:3379600/1‑101 (MQ=255) aGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAc < 1:3378950/101‑1 (MQ=255) ggCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg > 1:3379603/1‑101 (MQ=255) gCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcgc < 2:3378861/101‑1 (MQ=255) ataCAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGAt < 1:3379000/46‑1 (MQ=38) agaCAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGca > 1:3379606/1‑101 (MQ=255) aCAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTcc < 2:3378981/91‑1 (MQ=255) aCAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac > 2:3379609/1‑101 (MQ=255) cAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaaca > 1:3379611/1‑101 (MQ=255) aaCTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGatat > 2:3379616/1‑82 (MQ=255) aaCTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaacaa < 1:3379214/101‑1 (MQ=255) aCTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg > 1:3379617/1‑101 (MQ=255) cTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCg > 1:3379622/1‑61 (MQ=255) tACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCt > 2:3379624/1‑101 (MQ=255) tACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCt < 1:3378978/101‑1 (MQ=255) aCCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCAATATTGTTTCCGACGCGCAACAAGCTa > 1:3379626/1‑101 (MQ=255) cGACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAAt < 1:3379016/101‑1 (MQ=255) gACAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGc > 1:3379630/1‑59 (MQ=255) aCAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCt < 1:3379234/96‑1 (MQ=255) cAAAGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTa < 1:3379334/101‑1 (MQ=255) aaaGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTa < 2:3378984/100‑1 (MQ=255) aaaGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTAc < 2:3379032/101‑1 (MQ=255) aaGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACt > 1:3379633/1‑101 (MQ=255) aaGCGGC‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACt > 2:3379634/1‑101 (MQ=255) | CACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTG > NC_000913/2018424‑2018619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |