BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,105,642	T→C	D10G (GAC→GGC)	cpxR ←	DNA‑binding transcriptional dual regulator CpxR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,105,642	0	T	C	100.0%	1179.3 / NA	281	D10G (GAC→GGC)	cpxR	DNA‑binding transcriptional dual regulator CpxR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/170); total (111/170)

Only 100 of 299 total aligned reads displayed.

CGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTA  >  NC_000913/4105544‑4105739

cgtcCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGcca                                                                                                 >  2:6996432/1‑101 (MQ=255)

   ccAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGccatca                                                                                              <  1:6996259/101‑1 (MQ=255)

    cAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGccatcat                                                                                             >  2:6996437/1‑101 (MQ=255)

     agaagaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGccatcatc                                                                                            >  2:6996442/1‑101 (MQ=255)

     agaagaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGATCTCGGccatcatc                                                                                            >  1:6996441/1‑101 (MQ=255)

       aagaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCaa                                                                                          <  1:6995837/101‑1 (MQ=255)

       aagaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCaa                                                                                          <  2:6995848/101‑1 (MQ=255)

       aagaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCaa                                                                                          >  2:6996447/1‑101 (MQ=255)

        agaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAAc                                                                                         <  1:6995610/101‑1 (MQ=255)

        agaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAAc                                                                                         <  2:6996013/101‑1 (MQ=255)

        agaTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAAc                                                                                         <  2:6995679/101‑1 (MQ=255)

          aTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTa                                                                                       >  2:6996450/1‑101 (MQ=255)

          aTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTa                                                                                       <  2:6995912/101‑1 (MQ=255)

          aTCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTa                                                                                       <  1:6996056/101‑1 (MQ=255)

           tCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTaa                                                                                      >  1:6996451/1‑101 (MQ=255)

           tCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTaa                                                                                      <  1:6996232/101‑1 (MQ=255)

               gcgcCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAgg                                                                                  >  1:6996457/1‑101 (MQ=255)

               gcgcCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAgg                                                                                  <  2:6995739/101‑1 (MQ=255)

                 gcCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGAt                                                                                >  2:6996458/1‑101 (MQ=255)

                  ccTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGAtt                                                                               <  2:6995946/101‑1 (MQ=255)

                   cTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGAttt                                                                              <  1:6995908/101‑1 (MQ=255)

                    tGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGAtttt                                                                             >  2:6996463/1‑101 (MQ=255)

                    tGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGAtttt                                                                             <  2:6995984/101‑1 (MQ=255)

                      ttCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTAt                                                                           >  1:6996464/1‑101 (MQ=255)

                        ccccATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTc                                                                         >  1:6996467/1‑101 (MQ=255)

                         cccATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCa                                                                        <  2:6995788/101‑1 (MQ=255)

                          ccATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCAt                                                                       <  2:6996058/101‑1 (MQ=255)

                            aTCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTg                                                                     >  1:6996472/1‑101 (MQ=255)

                            aTCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTg                                                                     <  1:6995963/101‑1 (MQ=255)

                              cGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGtt                                                                   >  2:6996473/1‑101 (MQ=255)

                               gTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGttt                                                                  <  1:6995471/101‑1 (MQ=255)

                               gTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGttt                                                                  <  1:6995966/101‑1 (MQ=255)

                                 gggCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTaa                                                                <  1:6995863/101‑1 (MQ=255)

                                  ggCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTaaa                                                               <  2:6996177/101‑1 (MQ=255)

                                  ggCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTaaa                                                               <  2:6996066/101‑1 (MQ=255)

                                  ggCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTaaa                                                               <  1:6996169/101‑1 (MQ=255)

                                   gCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAAt                                                              <  2:6996027/101‑1 (MQ=255)

                                   gCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAAt                                                              <  1:6995983/101‑1 (MQ=255)

                                   gCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAAt                                                              <  1:6996070/101‑1 (MQ=255)

                                     aacaaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATAc                                                            >  1:6996479/1‑101 (MQ=255)

                                     aacaaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATAc                                                            <  1:6996092/101‑1 (MQ=255)

                                      acaaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATAcc                                                           >  2:6996481/1‑101 (MQ=255)

                                        aaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc                                                         <  1:6996113/101‑1 (MQ=255)

                                        aaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc                                                         >  2:6996485/1‑101 (MQ=255)

                                        aaTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc                                                         <  1:6996041/101‑1 (MQ=255)

                                         aTCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTcc                                                        <  1:6996306/101‑1 (MQ=255)

                                          tCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCg                                                       <  2:6996229/101‑1 (MQ=255)

                                            aCGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAg                                                     >  2:6996488/1‑101 (MQ=255)

                                            aCGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAg                                                     <  1:6995870/101‑1 (MQ=255)

                                             cGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAgg                                                    <  2:6995896/101‑1 (MQ=255)

                                              gTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGc                                                   >  1:6996490/1‑101 (MQ=255)

                                                tGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAg                                                 >  1:6996494/1‑101 (MQ=255)

                                                 gAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGa                                                >  2:6996496/1‑101 (MQ=255)

                                                   aGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCt                                                          <  2:6995961/89‑1 (MQ=255)

                                                   aGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGaaa                                              <  2:6995826/101‑1 (MQ=255)

                                                   aGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGaaa                                              >  1:6996498/1‑101 (MQ=255)

                                                      cTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGa                                                >  2:6996502/1‑96 (MQ=255)

                                                      cTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTa                                           <  1:6996078/101‑1 (MQ=255)

                                                      cTTCCATCTCGAGCAGCTCCTTTAATAGAGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTa                                           <  1:6995948/101‑1 (MQ=255)

                                                       ttCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTAc                                          <  1:6996003/101‑1 (MQ=255)

                                                          cATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtc                                       >  2:6996506/1‑101 (MQ=255)

                                                          cATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtc                                       <  2:6996193/101‑1 (MQ=255)

                                                           aTCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtca                                      <  1:6995993/101‑1 (MQ=255)

                                                           aTCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtca                                      >  2:6996509/1‑101 (MQ=255)

                                                                gAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGa                                 >  1:6996512/1‑101 (MQ=255)

                                                                 agcagcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGAc                                >  2:6996513/1‑101 (MQ=255)

                                                                 agcagcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGAc                                <  1:6995855/101‑1 (MQ=255)

                                                                 agcagcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGAc                                <  1:6995778/101‑1 (MQ=255)

                                                                  gcagcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACg                               <  2:6996117/101‑1 (MQ=255)

                                                                    agcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTc                             <  1:6995546/101‑1 (MQ=255)

                                                                    agcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTc                             <  1:6996021/101‑1 (MQ=255)

                                                                    agcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTc                             <  1:6996184/101‑1 (MQ=255)

                                                                    agcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTc                             <  1:6996208/101‑1 (MQ=255)

                                                                     gcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCg                            <  2:6996148/101‑1 (MQ=255)

                                                                     gcTCCTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCg                            <  2:6996253/101‑1 (MQ=255)

                                                                      cTCCTTTAATAGGGAAGTCAGCTCTCGACCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAgg                                                    >  1:6996517/1‑76 (MQ=255)

                                                                         cTTTAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTaa                        <  2:6995921/101‑1 (MQ=255)

                                                                          tttAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGc                                                   <  1:6996174/73‑1 (MQ=255)

                                                                          tttAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAAt                       >  2:6996521/1‑101 (MQ=255)

                                                                           ttAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAg                                  >  2:6996527/1‑89 (MQ=255)

                                                                           ttAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATc                      >  2:6996524/1‑101 (MQ=255)

                                                                            tAATAGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATcc                     >  1:6996528/1‑101 (MQ=255)

                                                                                aGGGAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGa                 <  2:6996136/101‑1 (MQ=255)

                                                                                 gggAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGAc                >  1:6996532/1‑101 (MQ=255)

                                                                                  ggAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACt               <  2:6996269/101‑1 (MQ=255)

                                                                                  ggAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACt               <  1:6996130/101‑1 (MQ=255)

                                                                                   gAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACtt              <  2:6996080/101‑1 (MQ=255)

                                                                                   gAAGTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACtt              >  2:6996534/1‑101 (MQ=255)

                                                                                      gTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc                                                         <  2:6996099/55‑1 (MQ=255)

                                                                                      gTCAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTAc           <  1:6996147/101‑1 (MQ=255)

                                                                                        cAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgt         >  1:6996539/1‑101 (MQ=255)

                                                                                        cAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgt         <  2:6996154/101‑1 (MQ=255)

                                                                                        cAGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgt         >  2:6996541/1‑101 (MQ=255)

                                                                                         aGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgtt        <  1:6996085/101‑1 (MQ=255)

                                                                                         aGCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgtt        >  2:6996544/1‑101 (MQ=255)

                                                                                          gCTCTCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgttg       >  1:6996546/1‑101 (MQ=255)

                                                                                           ctctCGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgttgt      <  1:6996350/101‑1 (MQ=255)

                                                                                            tctcGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgttgtt     >  2:6996550/1‑101 (MQ=255)

                                                                                            tctcGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACgttgtt     >  2:6996553/1‑101 (MQ=255)

                                                                                             ctcGGCCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGttt    <  2:6996047/101‑1 (MQ=255)

CGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTA  >  NC_000913/4105544‑4105739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`