New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	23 (0.060)	22/194	21.3	4.0%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	3623359 =	557 (1.470)					coding (4168/4236 nt)	rhsB	rhs element protein RhsB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3583526‑3583428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTTTAGGAACTGTGTCA  >  NC_000913/3623359‑3623453                                                                                                                                                                                                    TCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA                                                                                               >  2:43475/1‑101             CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGA                                                                                   >  1:43506/1‑101                       AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAAC                                                                         <  1:3612486/101‑1                          TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGA                                                                      <  2:523920/101‑1                           GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAA                                                                     <  2:3612624/101‑1                             TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAA                                                                   >  2:43538/1‑101                                      AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCT                                                          <  1:42338/101‑1                                          CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATG                                                      >  1:43567/1‑101                                               GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGC                                                 >  1:43577/1‑101                                                          AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATG                                       >  1:6808000/1‑100                                                              ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAAT                                  >  1:6807999/1‑101                                                               CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATt                                 <  1:42314/101‑2                                                               CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATA                                 <  2:42741/101‑1                                                                   CATACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTA                             >  1:6807998/1‑101                                                                     TACACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAA                           >  1:6807997/1‑101                                                                        ACTAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAA                        >  1:6807996/1‑101                                                                          TAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAAT                      >  2:6807995/1‑101                                                                          TAAATCAGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAAT                      <  1:42434/101‑1                                                                                AGTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTT                <  1:42298/101‑1                                                                                 GTAAGTTGGCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTTT               <  1:42830/101‑1                                                                                         GCAGCATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTGCCTAATGTCTGCAGGGTTCATGGTAATATGTAAAAAAATATTGTTTAGGA           <  1:42868/97‑1                                                                                             CATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTTTAGGAACTGTGTC   <  1:43269/101‑1                                                                                              ATCACCAACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTTTAGGAACTGTGTCA  <  2:43220/101‑1                                                                                                                                                                                                    TCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3583526‑3583428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACCACGGGAAGGAAATAACAAACAGAAAAGGATTACCTAATGTCTGCAGAGTTCATGGTAATATGTAAAAAAATATTGTTTAGGAACTGTGTCA  >  NC_000913/3623359‑3623453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.