Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 967,101 T→C F161L (TTC→CTC)  msbA → ATP‑binding lipopolysaccharide transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913967,1010TC99.3% 1161.5 / ‑4.1 276F161L (TTC→CTC) msbAATP‑binding lipopolysaccharide transport protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (128/146);  total (129/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 279 total aligned reads displayed.

TTACCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGTTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACATCAG  >  NC_000913/967003‑967198
                                                                                                  |                                                                                                 
 tACCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGctct                                                                                                <  1:1879647/101‑1 (MQ=255)
 tACCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGctct                                                                                                >  1:1880016/1‑101 (MQ=255)
  aCCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTa                                                                                               <  1:1879413/101‑1 (MQ=255)
  aCCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTa                                                                                               <  2:1879629/101‑1 (MQ=255)
   ccTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTAt                                                                                              <  1:1879335/101‑1 (MQ=255)
    cTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTAtt                                                                                             >  2:1880020/1‑101 (MQ=255)
    cTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTAtt                                                                                             >  1:1880021/1‑101 (MQ=255)
      aCGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTAc                                                                                           >  2:1880026/1‑101 (MQ=255)
       cGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGTTCTATTACa                                                                                          >  2:1880030/1‑101 (MQ=255)
       cGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTAc                                                                                           <  2:1879494/100‑1 (MQ=255)
         aTTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGt                                                                                        >  1:1880032/1‑101 (MQ=255)
         aTTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGt                                                                                        <  2:1879637/101‑1 (MQ=255)
           tCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTg                                                                                      <  2:1879653/101‑1 (MQ=255)
            ccGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTgg                                                                                     >  2:1880035/1‑101 (MQ=255)
            ccGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTgg                                                                                     >  1:1880037/1‑101 (MQ=255)
            ccGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTgg                                                                                     <  2:1879361/101‑1 (MQ=255)
             cGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGc                                                                                    <  1:1879554/101‑1 (MQ=255)
              gAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTCGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCa                                                                                   >  1:1880042/1‑101 (MQ=255)
               aaCAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCaa                                                                                  >  2:1880045/1‑101 (MQ=255)
                 cAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACt                                                                                <  1:1879522/101‑1 (MQ=255)
                 cAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACt                                                                                <  2:1879600/101‑1 (MQ=255)
                  aGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTg                                                                               >  1:1880048/1‑101 (MQ=255)
                   ggTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGt                                                                              >  2:1880049/1‑101 (MQ=255)
                    gTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTc                                                                             <  2:1879467/101‑1 (MQ=255)
                    gTTGCTTCGTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTc                                                                             <  1:1879542/101‑1 (MQ=255)
                     ttGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCg                                                                            <  2:1879710/101‑1 (MQ=255)
                     ttGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCg                                                                            >  2:1880054/1‑101 (MQ=255)
                        cttcttcttcttCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATc                                                                         <  1:1879448/101‑1 (MQ=255)
                        cttcttcttcttCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATc                                                                         >  1:1880057/1‑101 (MQ=255)
                         ttcttcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCa                                                                        >  2:1880059/1‑101 (MQ=255)
                          tcttcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAt                                                                       >  1:1880061/1‑101 (MQ=255)
                           cttcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAtt                                                                      <  1:1879652/101‑1 (MQ=255)
                            ttcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATc                                                                         <  1:1879633/97‑1 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGc                                                                                    >  2:1880067/1‑85 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGa                                                                           <  2:1879430/94‑1 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAtttt                                                                    <  1:1879114/101‑1 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAtttt                                                                    <  1:1879486/101‑1 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAtttt                                                                    >  1:1880066/1‑101 (MQ=255)
                             tcttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCAtttt                                                                    <  2:1879545/101‑1 (MQ=255)
                              cttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTg                                                                   <  2:1879303/101‑1 (MQ=255)
                               ttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGa                                                                  >  1:1880070/1‑101 (MQ=255)
                               ttcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGa                                                                  <  1:1879590/101‑1 (MQ=255)
                                tcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGAt                                                                 >  2:1880074/1‑101 (MQ=255)
                                tcttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGAt                                                                 <  1:1879787/101‑1 (MQ=255)
                                  ttcCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATtg                                                               >  1:1880075/1‑101 (MQ=255)
                                    ccGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATtgtg                                                             >  1:1880079/1‑101 (MQ=255)
                                      ggCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCt                                                           <  1:1879460/101‑1 (MQ=255)
                                       gcgcACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTg                                                          <  1:1879755/101‑1 (MQ=255)
                                       gcgcACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTg                                                          <  2:1879536/101‑1 (MQ=255)
                                       gcgcACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTg                                                          >  2:1880082/1‑101 (MQ=255)
                                          cACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCa                                                       <  2:1879472/101‑1 (MQ=255)
                                          cACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCa                                                       <  1:1879258/101‑1 (MQ=255)
                                          cACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCa                                                       >  1:1880085/1‑101 (MQ=255)
                                           aCTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCAc                                                      <  1:1879613/101‑1 (MQ=255)
                                             tGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCg                                                    >  2:1880088/1‑101 (MQ=255)
                                               aTTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGAt                                                  <  2:1879935/101‑1 (MQ=255)
                                               aTTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGAt                                                  <  1:1879504/101‑1 (MQ=255)
                                               aTTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGAt                                                  >  2:1880091/1‑101 (MQ=255)
                                                ttACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGAtt                                                 >  2:1880094/1‑101 (MQ=255)
                                                ttACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGAtt                                                 >  1:1880092/1‑101 (MQ=255)
                                                 tACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTg                                                <  1:1879578/101‑1 (MQ=255)
                                                   cTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGtt                                              >  2:1880099/1‑101 (MQ=255)
                                                   cTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGtt                                              <  2:1879838/101‑1 (MQ=255)
                                                    tgttgtGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGttt                                             >  1:1880101/1‑101 (MQ=255)
                                                    tgttgtGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGttt                                             <  1:1879558/101‑1 (MQ=255)
                                                     gttgtGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTc                                            <  2:1879561/101‑1 (MQ=255)
                                                     gttgtGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTc                                            <  2:1879520/101‑1 (MQ=255)
                                                      ttgtGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCg                                           >  1:1880104/1‑101 (MQ=255)
                                                       tgtgCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGa                                          <  2:1879666/101‑1 (MQ=255)
                                                          gCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTg                                       >  1:1880108/1‑101 (MQ=255)
                                                               aaGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAggt                                                                                       >  2:1880112/1‑46 (MQ=255)
                                                               aaGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGAtt                                  >  1:1880111/1‑101 (MQ=255)
                                                                aGGTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTc                                 <  2:1879575/101‑1 (MQ=255)
                                                                 ggTGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTcg                                >  2:1880115/1‑101 (MQ=255)
                                                                   tGCGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTcgcg                              >  1:1880117/1‑101 (MQ=255)
                                                                     cGTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGtt                            <  1:1879716/101‑1 (MQ=255)
                                                                      gTCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTg                           <  1:1879662/101‑1 (MQ=255)
                                                                       tCGATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTcgc                               >  2:1880122/1‑96 (MQ=255)
                                                                         gATCATCGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTAt                        >  2:1880124/1‑101 (MQ=255)
                                                                           tcatcGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCg                      <  2:1879617/101‑1 (MQ=255)
                                                                             atcGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGaa                    <  1:1879850/101‑1 (MQ=255)
                                                                             atcGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGaa                    <  1:1879506/101‑1 (MQ=255)
                                                                             atcGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGaa                    >  1:1880127/1‑101 (MQ=255)
                                                                              tcGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAg                   <  2:1879611/101‑1 (MQ=255)
                                                                               cGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAAc                                                                                 <  1:1879433/38‑1 (MQ=38)
                                                                               cGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGc                  >  2:1880130/1‑101 (MQ=255)
                                                                               cGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGc                  <  1:1879516/101‑1 (MQ=255)
                                                                               cGGCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGc                  <  1:1879463/101‑1 (MQ=255)
                                                                                ggCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCg                 >  1:1880131/1‑101 (MQ=255)
                                                                                 gCCTGTTCATCATGATGCTCTATTACAGTTGGCAACTg                                                                               <  1:1879677/38‑1 (MQ=255)
                                                                                    tGTTCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGtttt             >  1:1880136/1‑101 (MQ=255)
                                                                                      ttCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCg           >  1:1880140/1‑101 (MQ=255)
                                                                                      ttCATCATGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCg           >  2:1880139/1‑101 (MQ=255)
                                                                                       tcatcaTGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGc          <  2:1879588/101‑1 (MQ=255)
                                                                                        catcatGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCa         >  1:1880143/1‑101 (MQ=255)
                                                                                         atcatGATGCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCaa        >  2:1880145/1‑101 (MQ=255)
                                                                                            atgatgCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACAt     <  1:1879873/101‑1 (MQ=255)
                                                                                             tgatgCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACATc    <  2:1879567/101‑1 (MQ=255)
                                                                                              gatgTTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACATCa   <  2:1879730/101‑1 (MQ=255)
                                                                                              gatgCTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACATCa   <  1:1879674/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
TTACCTACGATTCCGAACAGGTTGCTTCTTCTTCTTCCGGCGCACTGATTACTGTTGTGCGTGAAGGTGCGTCGATCATCGGCCTGTTCATCATGATGTTCTATTACAGTTGGCAACTGTCGATCATTTTGATTGTGCTGGCACCGATTGTTTCGATTGCGATTCGCGTTGTATCGAAGCGTTTTCGCAACATCAG  >  NC_000913/967003‑967198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑