BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,125,402	A→G	intergenic (‑76/‑160)	mdtH ← / → rimJ	multidrug efflux pump MdtH/ribosomal‑protein‑S5‑alanine N‑acetyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,125,402	0	A	G	100.0%	1411.2 / NA	332	intergenic (‑76/‑160)	mdtH/rimJ	multidrug efflux pump MdtH/ribosomal‑protein‑S5‑alanine N‑acetyltransferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (142/190); total (142/190)

Only 100 of 332 total aligned reads displayed.

CTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTG  >  NC_000913/1125304‑1125498

  cGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAat                                                                                              >  1:2159690/1‑101 (MQ=255)

   gCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAata                                                                                             >  2:2159693/1‑101 (MQ=255)

   gCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAata                                                                                             >  1:2159695/1‑101 (MQ=255)

    ccTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAatat                                                                                            <  2:2159321/101‑1 (MQ=255)

     cTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAtt                                                                                           >  2:2159699/1‑101 (MQ=255)

       gCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAtttt                                                                                         >  2:2159702/1‑101 (MQ=255)

        cGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAttttt                                                                                        <  2:2159128/101‑1 (MQ=255)

          acacGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAttttttt                                                                                      >  1:2159704/1‑101 (MQ=255)

           cacGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAttttttt                                                                                      <  2:2159347/100‑1 (MQ=255)

           cacGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTa                                                                                     >  1:2159708/1‑101 (MQ=255)

            acGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTAt                                                                                    <  1:2159220/101‑1 (MQ=255)

            acGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTAt                                                                                    <  2:2159056/101‑1 (MQ=255)

             cgcgGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATc                                                                                   >  2:2159711/1‑101 (MQ=255)

              gcgGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAttt                                                                                          <  2:2158869/93‑1 (MQ=255)

                gggACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCaaa                                                                                <  2:2159119/101‑1 (MQ=255)

                 ggACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCaaaa                                                                               <  2:2159177/101‑1 (MQ=255)

                 ggACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCaaaa                                                                               <  1:2159239/101‑1 (MQ=255)

                  gACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAAc                                                                              >  1:2159714/1‑101 (MQ=255)

                   aCATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACg                                                                             >  2:2159716/1‑101 (MQ=255)

                    cATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGt                                                                            <  1:2159030/101‑1 (MQ=255)

                         ccccTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCtt                                                                       <  2:2159270/101‑1 (MQ=255)

                         ccccTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCtt                                                                       >  2:2159721/1‑101 (MQ=255)

                           ccTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTg                                                                     <  1:2159261/101‑1 (MQ=255)

                           ccTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTg                                                                     >  1:2159724/1‑101 (MQ=255)

                              cccGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATa                                                                  <  2:2159397/101‑1 (MQ=255)

                              cccGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATa                                                                  >  2:2159728/1‑101 (MQ=255)

                              cccGGGAAATAAAAGATGAGCACTTTCTATTCTGCACTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGt                                                                            <  1:2159081/91‑1 (MQ=255)

                                 gggAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagag                                                               >  1:2159730/1‑101 (MQ=255)

                                  ggAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagaga                                                              >  2:2159734/1‑101 (MQ=255)

                                  ggAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagaga                                                              <  2:2159281/101‑1 (MQ=255)

                                   gAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagagag                                                             >  2:2159737/1‑101 (MQ=255)

                                   gAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagagag                                                             <  2:2159289/101‑1 (MQ=255)

                                   gAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATagagag                                                             <  2:2159427/101‑1 (MQ=255)

                                    aaaTAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGt                                                            >  1:2159740/1‑101 (MQ=255)

                                    aaaTAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGt                                                            >  2:2159742/1‑101 (MQ=255)

                                     aaTAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGtt                                                           <  1:2159204/101‑1 (MQ=255)

                                     aaTAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGtt                                                           <  1:2159478/101‑1 (MQ=255)

                                      aTAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGttt                                                          >  2:2159746/1‑101 (MQ=255)

                                        aaaaGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTTGCTTTGATAGAGAGttttt                                                        >  1:2159752/1‑101 (MQ=255)

                                        aaaaGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGttttt                                                        >  2:2159750/1‑101 (MQ=255)

                                        aaaaGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGttttt                                                        <  1:2159576/101‑1 (MQ=255)

                                          aaGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTAt                                                      <  1:2159214/101‑1 (MQ=255)

                                           aGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATc                                                     >  1:2159757/1‑101 (MQ=255)

                                              tGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCaaa                                                  <  1:2159518/101‑1 (MQ=255)

                                               gAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAat                                                 >  2:2159762/1‑101 (MQ=255)

                                                  cACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtg                                              <  2:2159602/101‑1 (MQ=255)

                                                  cACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtg                                              >  2:2159765/1‑101 (MQ=255)

                                                   aCTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgt                                             <  1:2159439/101‑1 (MQ=255)

                                                   aCTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgt                                             <  1:2158774/101‑1 (MQ=255)

                                                   aCTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgt                                             <  2:2159196/101‑1 (MQ=255)

                                                   aCTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgt                                             >  1:2159766/1‑101 (MQ=255)

                                                    cTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATTAAATAtgtg                                            <  1:2159296/101‑1 (MQ=255)

                                                    cTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgtg                                            <  1:2159159/101‑1 (MQ=255)

                                                    cTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgtg                                            <  2:2159012/101‑1 (MQ=255)

                                                    cTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATAtgtg                                            >  2:2159770/1‑101 (MQ=255)

                                                     tttCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGa                                           <  2:2159416/101‑1 (MQ=255)

                                                      ttCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaa                                          <  1:2159276/101‑1 (MQ=255)

                                                        cTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaata                                        <  2:2159309/101‑1 (MQ=255)

                                                         tATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaataa                                       <  2:2159353/101‑1 (MQ=255)

                                                          aTTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaataat                                      >  2:2159776/1‑101 (MQ=255)

                                                          aTTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaataat                                      >  1:2159775/1‑101 (MQ=255)

                                                              tGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAg                                  >  2:2159780/1‑101 (MQ=255)

                                                                cATTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaa                                <  1:2159316/101‑1 (MQ=255)

                                                                 aTTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATAttttt                                                                                        <  2:2159150/44‑1 (MQ=255)

                                                                 aTTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaaa                               <  2:2159255/101‑1 (MQ=255)

                                                                 aTTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaaa                               <  1:2159402/101‑1 (MQ=255)

                                                                 aTTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaaa                               >  2:2159785/1‑101 (MQ=255)

                                                                 aTTGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaaa                               <  2:2159533/101‑1 (MQ=255)

                                                                  ttGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGaaaa                              <  1:2159175/101‑1 (MQ=255)

                                                                   tGCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAAt                             <  2:2159336/101‑1 (MQ=255)

                                                                    gCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATg                            <  2:2159227/101‑1 (MQ=255)

                                                                    gCCGCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATg                            >  1:2159787/1‑101 (MQ=255)

                                                                       gCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCa                         <  1:2159290/101‑1 (MQ=255)

                                                                       gCTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCa                         >  2:2159792/1‑101 (MQ=255)

                                                                        cTAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCAt                        <  1:2159604/101‑1 (MQ=255)

                                                                         tAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCAtt                       >  1:2159795/1‑101 (MQ=255)

                                                                         tAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCAtt                       >  2:2159796/1‑101 (MQ=255)

                                                                         tAAGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCAt                        <  1:2159447/100‑1 (MQ=255)

                                                                           aGACTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCAtttt                     >  2:2159799/1‑101 (MQ=255)

                                                                             aCTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTgg                   <  1:2159100/101‑1 (MQ=255)

                                                                              cTTTTCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGa                  <  1:2159251/101‑1 (MQ=255)

                                                                               ttttCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGAc                 <  2:2159375/101‑1 (MQ=255)

                                                                               ttttCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGAc                 >  1:2159804/1‑101 (MQ=255)

                                                                                tttCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACt                >  2:2159807/1‑101 (MQ=255)

                                                                                 ttCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACtt               <  2:2159264/101‑1 (MQ=255)

                                                                                  tCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACttt              <  2:2159455/101‑1 (MQ=255)

                                                                                  tCCCATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACttt              <  1:2159377/101‑1 (MQ=255)

                                                                                    ccATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTc            <  1:2159328/101‑1 (MQ=255)

                                                                                    ccATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTc            <  1:2159342/101‑1 (MQ=255)

                                                                                     cATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACttttaa           <  2:2159476/101‑3 (MQ=255)

                                                                                     cATCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTca           >  2:2159811/1‑101 (MQ=255)

                                                                                      aTCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTcac          <  1:2159635/101‑1 (MQ=255)

                                                                                      aTCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTcac          >  1:2159815/1‑101 (MQ=255)

                                                                                       tCACTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTcaca         >  2:2159817/1‑101 (MQ=255)

                                                                                         aCTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAgg       >  1:2159820/1‑101 (MQ=255)

                                                                                         aCTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAgg       <  2:2159492/101‑1 (MQ=255)

                                                                                          cTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGAc                 <  2:2159218/90‑1 (MQ=255)

                                                                                          cTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAggg      <  1:2159433/101‑1 (MQ=255)

                                                                                          cTTCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAggg      <  1:2159503/101‑1 (MQ=255)

                                                                                           ttCGGGGGCAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGt     >  1:2159823/1‑101 (MQ=255)

CTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTG  >  NC_000913/1125304‑1125498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`