BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,041,234	T→C	intergenic (‑164/‑79)	sdhE ← / → ygfZ	FAD assembly factor/folate‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,041,234	0	T	C	100.0%	1859.3 / NA	435	intergenic (‑164/‑79)	sdhE/ygfZ	FAD assembly factor/folate‑binding protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (211/224); total (211/224)

Only 100 of 437 total aligned reads displayed.

GGAATATCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGTAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCTTTTC  >  NC_000913/3041136‑3041331

ggAATATCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAg                                                                                                 <  1:5583983/101‑1 (MQ=255)

 gAATATCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGt                                                                                                <  1:5584024/101‑1 (MQ=255)

   atatCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGa                                                                                              <  2:5584012/101‑1 (MQ=255)

   atatCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGa                                                                                              >  2:5584720/1‑101 (MQ=255)

    tatCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGaa                                                                                             >  1:5584721/1‑101 (MQ=255)

     atCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGaaa                                                                                            <  2:5584199/101‑1 (MQ=255)

      tCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAg                                                                                           >  1:5584726/1‑101 (MQ=255)

        aGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCa                                                                                         <  2:5584278/101‑1 (MQ=255)

          tAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACt                                                                                       >  1:5584734/1‑101 (MQ=255)

            aaCACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTg                                                                                     >  2:5584738/1‑101 (MQ=255)

              cacCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCa                                                                                   >  2:5584744/1‑101 (MQ=255)

              cacCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCa                                                                                   >  1:5584745/1‑101 (MQ=255)

              cacCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCa                                                                                   <  1:5584374/101‑1 (MQ=255)

               acCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCAt                                                                                  <  1:5583792/101‑1 (MQ=255)

                 cATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTg                                                                                     <  1:5584332/96‑1 (MQ=255)

                 cATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTg                                                                                <  1:5584522/101‑1 (MQ=255)

                    cgcgatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCt                                                                             >  1:5584750/1‑101 (MQ=255)

                     gcgatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTc                                                                            <  1:5584365/101‑1 (MQ=255)

                     gcgatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTc                                                                            <  1:5584040/101‑1 (MQ=255)

                     gcgatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTc                                                                            <  1:5584327/101‑1 (MQ=255)

                      cgatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCt                                                                             >  2:5584756/1‑99 (MQ=255)

                       gatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCAt                                                                          >  1:5584762/1‑101 (MQ=255)

                       gatcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCAt                                                                          >  2:5584764/1‑101 (MQ=255)

                        atcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATa                                                                         <  2:5584224/101‑1 (MQ=255)

                        atcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATa                                                                         <  2:5584178/101‑1 (MQ=255)

                        atcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATa                                                                         <  2:5584453/101‑1 (MQ=255)

                         tcgcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAg                                                                        <  1:5584412/101‑1 (MQ=255)

                           gcgaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGct                                                                      >  2:5584771/1‑101 (MQ=255)

                             gaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGctct                                                                    >  2:5584776/1‑101 (MQ=255)

                             gaAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGctct                                                                    >  1:5584777/1‑101 (MQ=255)

                              aaaTTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCtt                                                                   <  2:5584169/101‑1 (MQ=255)

                                attaattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCtttt                                                                 <  2:5584238/101‑1 (MQ=255)

                                attaattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCtttt                                                                 >  2:5584786/1‑101 (MQ=255)

                                attaattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCtttt                                                                 >  1:5584785/1‑101 (MQ=255)

                                attaattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCtttt                                                                 <  1:5584248/101‑1 (MQ=255)

                                 ttaattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTa                                                                <  2:5584141/101‑1 (MQ=255)

                                  taattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTAc                                                               >  2:5584796/1‑101 (MQ=255)

                                  taattCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTAc                                                               >  1:5584793/1‑101 (MQ=255)

                                    attCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCa                                                             <  1:5584310/101‑1 (MQ=255)

                                      tCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCAtt                                                           >  2:5584804/1‑101 (MQ=255)

                                       cacaACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTa                                                          >  1:5584807/1‑101 (MQ=255)

                                       cacaACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTa                                                          <  2:5584116/101‑1 (MQ=255)

                                        acaacaATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAg                                                         <  1:5584441/101‑1 (MQ=255)

                                         caacaaTTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGt                                                        >  2:5584810/1‑101 (MQ=255)

                                          aacaaTTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTc                                                       >  1:5584814/1‑101 (MQ=255)

                                            caaTTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCAt                                                     >  1:5584819/1‑101 (MQ=255)

                                             aaTTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCAtt                                                    <  2:5583937/101‑1 (MQ=255)

                                              aTTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTa                                                   >  2:5584825/1‑101 (MQ=255)

                                               ttCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTaa                                                  <  1:5584198/101‑1 (MQ=255)

                                               ttCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTaa                                                  >  1:5584829/1‑101 (MQ=255)

                                                  aaTGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATAc                                               >  1:5584835/1‑101 (MQ=255)

                                                  aaTGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATAc                                               >  2:5584838/1‑101 (MQ=255)

                                                     ggCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGcc                                            <  2:5584038/101‑1 (MQ=255)

                                                     ggCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGcc                                            <  2:5584090/101‑1 (MQ=255)

                                                     ggCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGcc                                            >  1:5584841/1‑101 (MQ=255)

                                                        ttCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGtt                                         >  1:5584847/1‑101 (MQ=255)

                                                          cATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTaa                                       >  1:5584854/1‑101 (MQ=255)

                                                          cATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTaa                                       <  2:5584257/101‑1 (MQ=255)

                                                          cATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTaa                                       >  2:5584850/1‑101 (MQ=255)

                                                            tttttttGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGc                                     <  1:5584165/101‑1 (MQ=255)

                                                            tttttttGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGc                                     >  1:5584860/1‑101 (MQ=255)

                                                             ttttttGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCa                                    >  2:5584863/1‑101 (MQ=255)

                                                              tttttGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCaa                                   <  2:5584322/101‑1 (MQ=255)

                                                               ttttGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAAc                                  >  1:5584868/1‑101 (MQ=255)

                                                                  tGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCa                               <  1:5584276/101‑1 (MQ=255)

                                                                  tGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCa                               <  1:5584658/101‑1 (MQ=255)

                                                                  tGGAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCa                               >  1:5584873/1‑101 (MQ=255)

                                                                    gAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAgg                             <  2:5584498/101‑1 (MQ=255)

                                                                    gAAGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAgg                             >  2:5584875/1‑101 (MQ=255)

                                                                     aaGTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGa                            >  2:5584880/1‑101 (MQ=255)

                                                                       gTCGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAct                          <  2:5584233/101‑1 (MQ=255)

                                                                         cGCCTCGCAGAAGGGACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATAc                                               >  2:5584886/1‑78 (MQ=255)

                                                                         cGCCTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGActct                        <  1:5584475/101‑1 (MQ=255)

                                                                           ccTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAg                                                                        >  2:5584894/1‑51 (MQ=255)

                                                                           ccTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCaa                                   <  1:5583934/88‑1 (MQ=255)

                                                                           ccTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtat                      >  1:5584891/1‑101 (MQ=255)

                                                                           ccTCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtat                      <  1:5584111/101‑1 (MQ=255)

                                                                             tCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtatta                    <  2:5584207/101‑1 (MQ=255)

                                                                             tCGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtatta                    <  1:5584080/101‑1 (MQ=255)

                                                                              cGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtattat                   >  2:5584900/1‑101 (MQ=255)

                                                                              cGCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCtattat                   >  1:5584901/1‑101 (MQ=255)

                                                                               gCAGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATg                  >  1:5584906/1‑101 (MQ=255)

                                                                                 aGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGc                <  1:5584354/101‑1 (MQ=255)

                                                                                 aGAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGc                <  1:5584579/101‑1 (MQ=255)

                                                                                  gAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCt               >  2:5584913/1‑101 (MQ=255)

                                                                                  gAAGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCt               >  1:5584914/1‑101 (MQ=255)

                                                                                   aaGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCtt              <  1:5584457/101‑1 (MQ=255)

                                                                                    aGGCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCttt             <  2:5584353/101‑1 (MQ=255)

                                                                                     ggCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCtttt            <  2:5584409/101‑1 (MQ=255)

                                                                                     ggCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCtttt            <  2:5584616/101‑1 (MQ=255)

                                                                                      gCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTa           >  1:5584923/1‑101 (MQ=255)

                                                                                      gCACAGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTa           >  2:5584922/1‑101 (MQ=255)

                                                                                       cacaGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATgg                 <  1:5584292/94‑1 (MQ=255)

                                                                                       cacaGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTac          <  1:5584396/101‑1 (MQ=255)

                                                                                          aGATCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACAcc       <  2:5584157/101‑1 (MQ=255)

                                                                                            aTCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCtt     <  1:5584182/101‑1 (MQ=255)

                                                                                             tCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCttt    <  2:5584298/101‑1 (MQ=255)

                                                                                             tCGCGCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCttt    <  2:5584388/101‑1 (MQ=255)

                                                                                              cgcgCAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCtttt   <  1:5584134/101‑1 (MQ=255)

                                                                                               gcgcAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTActa                                                             >  1:5584931/1‑40 (MQ=255)

GGAATATCAGTAAACACCATCGCGATCGCGAAATTAATTCACAACAATTCAATGGCTTCATTTTTTTGGAAGTCGCCTCGCAGAAGGCACAGATCGCGTAGTGAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGACTCTATTATGGCTTTTACACCTTTTC  >  NC_000913/3041136‑3041331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`