Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,799,026 (A)5→6 intergenic (‑531/‑138) stpA ← / → alaE DNA‑binding transcriptional repressor StpA with RNA chaperone activity/L‑alanine exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,799,0211.A100.0% 1940.3 / NA 440intergenic (‑526/‑143)stpA/alaEDNA‑binding transcriptional repressor StpA with RNA chaperone activity/L‑alanine exporter
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (214/226);  total (214/226)

Only 100 of 489 total aligned reads displayed.

GGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑AAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCT  >  NC_000913/2798921‑2799116
                                                                                                      |                                                                                               
ggTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAc                                                                                                  <  1:5048129/101‑1 (MQ=255)
  tAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aa                                                                                               >  2:5048794/1‑101 (MQ=255)
     ggCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaaa                                                                                            >  2:5048802/1‑101 (MQ=255)
      gCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaaaa                                                                                           <  1:5048580/101‑2 (MQ=255)
       ccATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGATTATTTTATCTAC‑aaaaaac                                                                                          <  1:5048053/101‑3 (MQ=255)
       ccATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATTTTTTATCTAC‑aaaaaac                                                                                          >  2:5048813/1‑99 (MQ=255)
       ccATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaaaac                                                                                          >  1:5048809/1‑99 (MQ=255)
            tCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACt                                                                                      >  1:5048821/1‑101 (MQ=255)
            tCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAACCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACt                                                                                      >  2:5048822/1‑101 (MQ=255)
               aaTTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaa                                                                                   >  2:5048828/1‑101 (MQ=255)
               aaTTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAACCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaaa                                                                                            <  1:5047912/91‑1 (MQ=255)
                aTTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaat                                                                                  >  2:5048833/1‑101 (MQ=255)
                 ttGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaata                                                                                 <  1:5048242/101‑1 (MQ=255)
                   gATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaataaa                                                                               >  2:5048839/1‑101 (MQ=255)
                     tttAATTAAAAATAAATCATATCGGCATGGAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATaaaaa                                                                             >  2:5048845/1‑101 (MQ=255)
                        aattaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAttt                                                                          >  2:5048851/1‑101 (MQ=255)
                         attaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAtttt                                                                         >  1:5048855/1‑101 (MQ=255)
                         attaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAtttt                                                                         >  2:5048857/1‑101 (MQ=255)
                             aaaaTAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCAc                                                                     >  1:5048868/1‑101 (MQ=255)
                             aaaaTAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCAc                                                                     >  2:5048869/1‑101 (MQ=255)
                                 taaatCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAAt                                                                 <  1:5048318/101‑1 (MQ=255)
                                   aatCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTg                                                               >  2:5048878/1‑101 (MQ=255)
                                     tCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGAt                                                             >  1:5048879/1‑101 (MQ=255)
                                       atatCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTa                                                           >  2:5048886/1‑101 (MQ=255)
                                       atatCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTa                                                           >  1:5048889/1‑101 (MQ=255)
                                         atCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGt                                                         >  2:5048898/1‑101 (MQ=255)
                                         atCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGt                                                         >  1:5048897/1‑101 (MQ=255)
                                          tCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTc                                                        >  2:5048905/1‑101 (MQ=255)
                                             gCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATa                                                     >  1:5048910/1‑101 (MQ=255)
                                              cATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAg                                                    >  2:5048916/1‑101 (MQ=255)
                                               aTGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGc                                                   >  1:5048918/1‑101 (MQ=255)
                                               aTGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaaa                                                                                            <  1:5047707/59‑1 (MQ=255)
                                                tgaaaaaaTCCACAATGTAAAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAtt                                                                           <  2:5048257/73‑1 (MQ=255)
                                                  tAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAg                                                >  1:5048927/1‑101 (MQ=255)
                                                  tAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAg                                                >  2:5048928/1‑101 (MQ=255)
                                                  aaaaaaCCCACAATGAAAAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑aaaa                                                                                             <  2:5047965/54‑1 (MQ=255)
                                                   aaaaaTCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTg                                                               <  1:5048032/85‑1 (MQ=255)
                                                   aaaaaTCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGc                                               <  1:5048213/101‑1 (MQ=255)
                                                   aaaaaTCCACAATGTAAAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAtt                                                                           <  2:5047573/73‑1 (MQ=255)
                                                     aaaTCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGa                                             >  2:5048935/1‑101 (MQ=255)
                                                      aaTCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGat                                            >  1:5048940/1‑101 (MQ=255)
                                                        tCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGatat                                          >  2:5048945/1‑101 (MQ=255)
                                                          cacaATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCg                                              <  1:5048111/95‑1 (MQ=255)
                                                          cacaATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATAc                                        >  1:5048949/1‑101 (MQ=255)
                                                            caATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGc                                      >  1:5048955/1‑101 (MQ=255)
                                                             aaTGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCt                                     >  2:5048957/1‑101 (MQ=255)
                                                                gTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTa                                                                   <  1:5048145/68‑1 (MQ=255)
                                                                gTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTg                                                               <  1:5048433/72‑1 (MQ=255)
                                                                gTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATg                                  >  1:5048964/1‑101 (MQ=255)
                                                                gTAAAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATa                                                     <  2:5048442/82‑1 (MQ=255)
                                                                 taaaaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAg                                                          <  2:5048182/73‑1 (MQ=255)
                                                                 taaaaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCa                                                       <  2:5048484/76‑1 (MQ=255)
                                                                  aaaaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaataaa                                                                               <  2:5048384/52‑1 (MQ=255)
                                                                  aaaaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTc                                                        <  1:5048079/75‑1 (MQ=255)
                                                                   cAAAAAAC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGa                               >  2:5048967/1‑101 (MQ=255)
                                                                   aaaaaaaCGGAGCCGTTACGGAATATTTTATCTAC‑aaaaa                                                                                            <  2:5047812/39‑1 (MQ=255)
                                                                    aaaaagC‑GAGCCGTGACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCAc                                                                     <  1:5048232/62‑1 (MQ=255)
                                                                    aaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaataa                                                                                <  2:5048570/51‑1 (MQ=255)
                                                                    aaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAAt                                                                            <  1:5048337/55‑1 (MQ=255)
                                                                    aaaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCa                                                                      <  2:5047995/61‑1 (MQ=255)
                                                                    aaaaaaC‑GAGCCGTTACGGAATATCTTATCTACAAAAAACTGACTAAATAAAAATTTTTCa                                                                      <  2:5048108/61‑1 (MQ=255)
                                                                     aaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaaataaa                                                                               <  1:5048181/51‑1 (MQ=255)
                                                                     aaaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCg                                <  1:5048162/98‑1 (MQ=255)
                                                                      aaaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaaaa                            >  1:5048974/1‑101 (MQ=255)
                                                                       aaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAAt                           <  1:5048270/101‑1 (MQ=255)
                                                                       aaaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAAt                           >  2:5048980/1‑101 (MQ=255)
                                                                        atc‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaa                              <  2:5048039/95‑1 (MQ=255)
                                                                        aaC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATg                          >  1:5048981/1‑101 (MQ=255)
                                                                         aaggAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGc                                               <  2:5048217/77‑1 (MQ=255)
                                                                         aC‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGc                         <  2:5048408/101‑1 (MQ=255)
                                                                          c‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATg                          <  1:5048190/99‑1 (MQ=255)
                                                                          c‑GAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCa                        <  2:5048524/101‑1 (MQ=255)
                                                                            gAGCCGTTACGGAATATTTTATCTACAAAAAACTGACtaa                                                                                    <  1:5048095/40‑1 (MQ=255)
                                                                            gAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTaa                                                                  <  2:5048278/58‑1 (MQ=255)
                                                                            gAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACg                                       <  2:5048150/85‑1 (MQ=255)
                                                                            gAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAg                       <  1:5048004/101‑1 (MQ=255)
                                                                            gAGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAg                       <  2:5048296/101‑1 (MQ=255)
                                                                             aGCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGa                      >  1:5048989/1‑101 (MQ=255)
                                                                              gCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGAt                     <  2:5048336/101‑1 (MQ=255)
                                                                              gCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGAt                     <  1:5048497/101‑1 (MQ=255)
                                                                              gCCGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGAt                     <  1:5047309/101‑1 (MQ=255)
                                                                               ccGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATg                    <  1:5048800/101‑1 (MQ=255)
                                                                                cGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATgg                   >  2:5048992/1‑101 (MQ=255)
                                                                                cGTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATg                    <  2:5048246/100‑1 (MQ=255)
                                                                                 gTTACGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATgg                   >  1:5048996/1‑100 (MQ=255)
                                                                                    aCGGAATATTTTGTCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAAt               >  2:5049005/1‑101 (MQ=255)
                                                                                     cGGAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATg              >  1:5049008/1‑101 (MQ=255)
                                                                                      ggAATATTTTATCTACAAAAAACTGACTAAATAAAAAt                                                                            <  2:5048064/38‑1 (MQ=255)
                                                                                      ggAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATga             <  1:5048549/101‑1 (MQ=255)
                                                                                       gAATATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATgag            >  2:5049013/1‑101 (MQ=255)
                                                                                        aaTATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGc                                      <  1:5048448/74‑1 (MQ=255)
                                                                                        aaTATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATgaga           >  1:5049017/1‑101 (MQ=255)
                                                                                        aaTATTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATga             <  1:5048371/99‑1 (MQ=255)
                                                                                         atatTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGAt          <  1:5048398/101‑1 (MQ=255)
                                                                                          tatTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATc         <  1:5048637/101‑1 (MQ=255)
                                                                                          tatTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATc         <  1:5048292/101‑1 (MQ=255)
                                                                                          tatTTTATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATc         <  1:5047870/101‑1 (MQ=255)
                                                                                             tttATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCAc      >  2:5049024/1‑101 (MQ=255)
                                                                                             ttcaTCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCAc      <  2:5048313/98‑1 (MQ=255)
                                                                                               tATCTACAAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTg    >  1:5049030/1‑101 (MQ=255)
                                                                                                      |                                                                                               
GGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAAC‑GAGCCGTTACGGAATATTTTATCTAC‑AAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCT  >  NC_000913/2798921‑2799116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑