| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,374,034 | 0 | G | . | 33.3% | 33.6 / 23.1 | 18 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| Reads supporting (aligned to +/- strand): ref base G (0/12); new base . (0/6); total (0/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATATCTCTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAAT > NC_000913/1373970‑1374101 | tataTCTCTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGctc < 1:223745/68‑1 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGGTCTCGGGGGCGGTCTtca > 1:1943867/1‑68 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTtca > 1:313951/1‑68 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGGGCTCTtcc > 1:2419413/1‑67 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGGGCTCTtca > 1:3172075/1‑68 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGGGGTGCTCTtca > 1:3105812/1‑68 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGGGGGGCTCTtcc > 1:795859/1‑67 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGGGGGGCTCCtca > 1:2128171/1‑68 (MQ=255) tctcTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGAACTCCGCGGGGCTCTtca > 1:467180/1‑68 (MQ=255) tctACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGGGGGGCTCTtcatc > 1:2340940/1‑68 (MQ=255) cAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCatta < 1:3150647/68‑1 (MQ=255) cGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCg < 1:1079168/68‑1 (MQ=255) gcctttgcctttAATGGTTGAGGGGGAGGCGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCt < 1:949967/68‑1 (MQ=255) gcctttgcctttAATGGTGTAGAGGAAGGCGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCt < 1:1717471/68‑1 (MQ=255) ttgcctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:1143764/68‑1 (MQ=255) tgcctttAATGATTGAGGAGGAGGCGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCAt < 1:3052423/68‑1 (MQ=255) gcctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCAt < 1:837205/68‑1 (MQ=255) tttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTct < 1:855740/68‑1 (MQ=255) ttAATGATTTAGGGAGAGGCGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTctgc < 1:1635536/68‑1 (MQ=255) aaTGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTctgct < 1:2673075/68‑1 (MQ=255) aTGATTGAGAAAAAGGGGCGTCGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGa < 1:2204538/68‑1 (MQ=255) ttAGGAAAAGCGGCGGCGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAgg < 1:443476/68‑1 (MQ=255) tAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAgg < 1:2798951/68‑1 (MQ=255) tAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAgg < 1:3340813/68‑1 (MQ=255) aGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACggg < 1:3147447/68‑1 (MQ=255) ggcgATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGNCCAGGAAACGGGTGAAcc < 1:2575719/68‑1 (MQ=255) ggcgATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:1770533/68‑1 (MQ=255) ggcgATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:749404/68‑1 (MQ=255) gtggtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaa > 1:1613324/1‑68 (MQ=255) ggtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaacc > 1:839310/1‑67 (MQ=255) gtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaacaa < 1:375183/68‑1 (MQ=255) gtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaacaa < 1:2594819/68‑1 (MQ=255) gCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAAt > 1:3328466/1‑68 (MQ=255) gCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAAt > 1:2354614/1‑68 (MQ=255) | TATATCTCTACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAAT > NC_000913/1373970‑1374101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |