| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,357,894 | 0 | C | A | 50.0% | ‑3.2 / 12.0 | 12 | pseudogene (79/186 nt) | ypaA | protein YpaA |
| Reads supporting (aligned to +/- strand): ref base C (5/1); new base A (0/6); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.13e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCAGGAAGGTAAATTAGAAGGTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCG > NC_000913/2357827‑2357956 | tGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCCGGGAGGGAAAATAGAAGGTTTCCATTAAc > 1:3429253/1‑68 (MQ=18)tGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCAGGAAGGGAAATTAGAAGGGTTGCATGAAc > 1:3040419/1‑68 (MQ=255) gaaggaCATAAAATTGGGGGGCAGGAAGGTAAATAAGAAGGTTTGCATAAACAAGCCATTAAAATTGc < 1:3437462/68‑1 (MQ=25) gaaggaCATAAAATTGGCTGGCAGGAAGGTAAATTAGAAGTTTTGCATAAAAAAGCCATTAAAATTGc < 1:3047537/68‑1 (MQ=37) ggaCATCAAATTGGCTGGCAGGAAGGTAAATTAGAAGGTTTGCATGAACAAGCCATTAAAATTGCttt > 1:12437/1‑68 (MQ=255) aaaTTGGCTGGCAGAAAGATAATTTAGAAGGTGTGAAGGAAAAAGCCATTAAAATTGCTTTGCGCATg < 1:2242353/68‑1 (MQ=18) aaaTGGGCTGGCAGGAAGGTAAATAAGAAGGTTTGCATAAAAAAGCCATTAAAATTGCTTTGCGCATg < 1:2774871/68‑1 (MQ=21) ggctggcGGGAAGGTAAATTAGAAGGTTTGCATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGa < 1:1140360/68‑1 (MQ=21) ggcgggcAGAAAGGTAAATTAGAAGTTTTGCATGAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGa < 1:947298/68‑1 (MQ=18) ggaggaaggaAAATTAGAAGGTTTGCATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAgg < 1:3011255/66‑1 (MQ=18) gcAGGAAGGTAAATTAGAAGGTTTGAATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAgg < 1:2236249/68‑1 (MQ=21) cAGGAAGGTAAATTGGAAGGTTTGCATAAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAggg < 1:1390816/68‑1 (MQ=255) cAGAAAGGAAAATTAGAAGGTTGGAATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAggg < 1:1975710/68‑1 (MQ=18) ggaaggaaAATAAGAAGGTTTGCAAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCt < 1:2421045/68‑1 (MQ=17) ggTAAATAAGAAGGTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGa < 1:1525850/68‑1 (MQ=255) gttaaTAAGAATGTTGGCATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGAt < 1:2855271/65‑1 (MQ=14) gTAAATAAGAAGTTTGGAAGAAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGAt < 1:976590/68‑1 (MQ=14) ttAAAAGGTTTCAATGAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGa < 1:766538/68‑1 (MQ=17) taaGAAGTTTTGCATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGa < 1:1318860/66‑1 (MQ=17) taaGAAGGTTTCAATAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGa < 1:877347/66‑1 (MQ=17) ggTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCGTGCTGGAACAGGGCTTTGATCGTGACCAGGt > 1:2154291/1‑68 (MQ=255) ggTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGt > 1:1812671/1‑68 (MQ=255) ggTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGt > 1:78369/1‑68 (MQ=255) aTGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTcgcg > 1:1000458/1‑68 (MQ=255) | TGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCAGGAAGGTAAATTAGAAGGTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCG > NC_000913/2357827‑2357956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |