Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,619,399 C→T R94C (CGC→TGC)  marR → DNA‑binding transcriptional repressor MarR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,619,3990CT100.0% 108.0 / NA 31R94C (CGC→TGC) marRDNA‑binding transcriptional repressor MarR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (22/9);  total (22/9)

CCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAG  >  NC_000913/1619334‑1619462
                                                                 |                                                               
cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAgtgc                                                               >  1:3376549/1‑68 (MQ=255)
cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAgctg                                                               >  1:2494183/1‑66 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:299659/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:2734160/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:3256820/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:3535499/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:3515981/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:2455800/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:2342472/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTAc                                                        >  1:2508301/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGGTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:1436611/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAACGTTGCCGAACCCGAATGACAAGTGGGGAGTAc                                                        >  1:1700734/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGTGAGGCGTAc                                                        >  1:3367556/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGCTTGCCGAACCCGAATGACAAGTGCGGCGTaa                                                        >  1:1152540/1‑67 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGGCGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTAc                                                        >  1:1177090/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAGGCTGGG‑GGAAAGGGTGCCGAACCCGAATGACAAGGGCGGCGGACt                                                       >  1:13382/1‑68 (MQ=255)
       gCTGGATCGCCTGGTCTGTAAAAGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCAGCGTAc                                                        >  1:2441663/1‑68 (MQ=255)
         tGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTg                                                      <  1:1954600/68‑1 (MQ=255)
         tGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTg                                                      <  1:262607/68‑1 (MQ=255)
            aTCGCCTGGTCTGTAAAGGCTGGGTGGCAAGGTTGCCGAACCCGAATGACAAGCGCCGCGTACTggga                                                   >  1:1561493/1‑66 (MQ=255)
            aTCGCCTGGTCTGTAAAGGCTGGGTGGAACGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTa                                                   >  1:20033/1‑68 (MQ=255)
               gcgtGGTCTGGAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTGCTGGTaaaa                                                <  1:3055381/65‑1 (MQ=255)
                ccTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAAc                                               <  1:2010992/68‑1 (MQ=255)
                   ggTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTa                                            >  1:1976398/1‑68 (MQ=255)
                     tCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTacc                                          >  1:522342/1‑68 (MQ=255)
                     tCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTacc                                          >  1:54477/1‑68 (MQ=255)
                       tGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTaccac                                        >  1:2358514/1‑68 (MQ=255)
                          aaaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCATACTGGTAAAACTTACACCcgg                                     >  1:2579626/1‑68 (MQ=255)
                             ggCTGGGTGGAAAGGTTGCCGCACCCGAATGACAAGTGCGGCGTACTGGTAAAACTCACCACcgccgg                                  >  1:2006247/1‑68 (MQ=255)
                             ggCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACcggcgg                                  >  1:2977709/1‑68 (MQ=255)
                               cTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGgcggcg                                <  1:63068/68‑1 (MQ=255)
                               cTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGgcggcg                                >  1:483852/1‑68 (MQ=255)
                                  ggTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGgcggcgcgg                             <  1:2009770/68‑1 (MQ=255)
                                  ggTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGgcggcgcgg                             <  1:451299/68‑1 (MQ=255)
                                  ggTGGAAAGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGgcggcgcgg                             <  1:188479/68‑1 (MQ=255)
                                         aGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtg                      >  1:967802/1‑68 (MQ=255)
                                         aGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtg                      >  1:1885277/1‑68 (MQ=255)
                                         aGGTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtg                      >  1:3375124/1‑68 (MQ=255)
                                          ggTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtgt                     >  1:427788/1‑68 (MQ=255)
                                          ggTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtgt                     >  1:540624/1‑68 (MQ=255)
                                          ggTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtgt                     >  1:1414581/1‑68 (MQ=255)
                                          ggTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtgt                     >  1:599030/1‑68 (MQ=255)
                                          ggTTGCCGAACCCGAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATAtgg                     >  1:1493615/1‑67 (MQ=255)
                                                       gAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATc        <  1:3441699/68‑1 (MQ=255)
                                                       gAATGACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATc        <  1:2944128/68‑1 (MQ=255)
                                                           gACAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAAtt    >  1:2492060/1‑68 (MQ=255)
                                                             cAAGTGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAg  >  1:3486643/1‑68 (MQ=255)
                                                                 |                                                               
CCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAG  >  NC_000913/1619334‑1619462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑