| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 79 [0] | [0] 78 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 70 (1.580) | 25/112 | 0.1 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
GGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC > NC_000913/257844‑257971 | ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAc > 1:2252001‑M1/1‑64 (MQ=255)ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa > 1:2990942‑M1/1‑64 (MQ=255)ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAa > 1:2360121‑M1/1‑64 (MQ=255) gcaccCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:3396294‑M1/64‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2337193‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2889555‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:1925305‑M1/1‑62 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2082922‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2236670‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2500377‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:334105‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:3752619‑M1/1‑62 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:712055‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:1010723‑M1/65‑4 (MQ=255) cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:3709263‑M1/1‑61 (MQ=255) cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg < 1:201255‑M1/65‑5 (MQ=255) cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca > 1:1026060‑M1/1‑59 (MQ=255) cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagagca > 1:3702280‑M1/1‑59 (MQ=255) gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:314948‑M1/65‑10 (MQ=255) gAAGAGCAGATTGATCAAAAAATTTACCGCACCAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:3398028‑M1/65‑10 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:180629‑M1/65‑11 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:3032651‑M1/65‑11 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2631120‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:867908‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2607133‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2564675‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2244599‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagactg > 1:2147237‑M1/1‑52 (MQ=255) gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat > 1:1816726‑M1/1‑51 (MQ=255) gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat > 1:230622‑M1/1‑51 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat < 1:3509375‑M1/65‑19 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat > 1:1055991‑M1/1‑47 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat < 1:827744‑M1/65‑19 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt > 1:541184‑M1/1‑46 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt > 1:1465767‑M1/1‑46 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt > 1:694577‑M1/1‑46 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcgattct > 1:720‑M1/1‑44 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat < 1:924313‑M1/65‑30 (MQ=255) aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:3500008‑M1/65‑31 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:2870321‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:3742425‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:2335425‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:3934115‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:3726307‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:3222389‑M1/65‑33 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:1507390‑M1/65‑37 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:3243925‑M1/65‑37 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:3049068‑M1/65‑37 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:2569016‑M1/65‑37 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:2955779‑M1/65‑37 (MQ=255) gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc > 1:2128529‑M1/1‑28 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:1649247‑M1/65‑39 (MQ=255) cTAGGCCCTTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:2364843‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:3273048‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:3682716‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:3302174‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1325275‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:3308668‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:878624‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAAGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:3686569‑M1/65‑41 (MQ=255) cTAGCCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1758906‑M1/65‑41 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:3873782‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:2051024‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:1085727‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:1035411‑M1/1‑20 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcctg > 1:1146343‑M1/1‑15 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac < 1:3247911‑M1/65‑51 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac < 1:1453845‑M1/65‑51 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt > 1:3073758‑M1/1‑13 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgc > 1:740511‑M1/1‑13 (MQ=255) tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga > 1:4046594‑M1/1‑11 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcagcgtgaaac < 1:1931364‑M1/65‑58 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc > 1:1647937‑M1/1‑4 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc > 1:1371703‑M1/1‑4 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca > 1:2971896‑M1/1‑3 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:1660688‑M1/65‑65 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:4005587‑M1/65‑65 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:328123‑M1/65‑65 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:1864386‑M1/65‑65 (MQ=255) | GGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC > NC_000913/257844‑257971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |