| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 52 (1.020) | 5 (0.110) | 5/110 | 2.0 | 9.8% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 47 (1.080) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATT > NC_000913/4542618‑4542743 | actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccacaagatgaaaaatt < 1:33512‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:1199877‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2377085‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:371806‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:3479670‑M1/1‑1 (MQ=255)aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:707754‑M1/65‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:1139980‑M1/2‑1 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:3643072‑M1/1‑65 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagctgaaacatTTgg < 1:730721‑M1/4‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:113398‑M1/4‑1 (MQ=255) tgttttgtaatcgagtttgactgcccacactgcacagttttcccccaaaagatgaaacatTTggg > 1:259877‑M1/61‑65 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:3476648‑M1/61‑65 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG < 1:1953480‑M1/65‑1 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:1355538‑M1/6‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 1:3215608‑M1/1‑65 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 1:1636969‑M1/1‑65 (MQ=255) tttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGcc < 1:3014668‑M1/8‑1 (MQ=255) tttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGcc < 1:1550678‑M1/8‑1 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:1347121‑M1/57‑65 (MQ=255) tgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:2367057‑M1/56‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:96750/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:2427962/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:3758968/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1475696/65‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttt > 1:2541938‑M1/1‑62 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:2970056/65‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:3858812/65‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:1755796/65‑1 (MQ=255) gATTTACCTTATTGATAATAAAGTTAAAAAAACAAATAAAAACAAGACAATTGGGGCCAAACTGt < 1:1954403/65‑1 (MQ=255) gATTTACCTTATTGATAATAAAGTTAAAAAAACAAATAAAAAAAAGCCAATTGGGGCCAAACTGt < 1:1566552/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:1949664/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:3483624/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:1237463/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:558212/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATGGGGGCCAAACTGt < 1:2750918/65‑1 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAACCTGTcc > 1:2296765/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:3319662/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:1363059/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:3752379/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:2163222/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:2681186/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:28721/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:890012/65‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:1856865/65‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:1350862/1‑65 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACGAGACAATTGGGGCCAAACTGTCCATATCat < 1:618863/65‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:2250630‑M1/65‑17 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:3428048/65‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaa > 1:1016866‑M1/1‑47 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:212464/1‑65 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1238773/65‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata > 1:2736354/1‑65 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa < 1:3507723/65‑1 (MQ=255) aataaAGTT‑AAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:1910215/65‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATGCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:3818818/65‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGtt < 1:3399464‑M1/33‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:2052137‑M1/34‑1 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:1763964/1‑65 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt > 1:1253999/1‑65 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:2719883‑M1/38‑1 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:1203030/65‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaact < 1:2657675‑M1/65‑36 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1474271/65‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATACCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:3539173/65‑1 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:2458113/1‑65 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:3430705/1‑65 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:128693/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaat > 1:3644289/1‑64 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:3175387/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:3510959/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:2928993/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:1327023/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCTATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:2564772/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:2813939/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:51743/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1710641/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:3431668/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:813804/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1416009/1‑65 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt < 1:3179719‑M1/62‑1 (MQ=255) | AAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATT > NC_000913/4542618‑4542743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |