| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 2 (0.040) | 49 (1.290) | 18/96 | 0.3 | 88.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 11 (0.290) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
CAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209539‑1209666 | cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:106533‑M2/1‑64 (MQ=255)cacccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 1:1439780/62‑1 (MQ=255) ccagccTGTTGGCGGAGTGGCTGCAGGCCACGGGACCGGCACACCAACAGGTAATGCAGAGcctt < 1:3834126‑M2/65‑5 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt < 1:1625058‑M2/65‑5 (MQ=255) tgcctGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct > 1:978806‑M2/2‑59 (MQ=255) agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct > 1:1893670‑M2/1‑59 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:2554034‑M2/1‑58 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc > 1:3010476‑M2/1‑57 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaagccaa < 1:469499‑M2/65‑17 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa > 1:3589668/1‑65 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:192060‑M2/65‑30 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:3074273‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:4033809‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:3889196/1‑65 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:693691‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1205333‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:2905210‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1023395‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:3250648‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1274955‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1324700‑M2/1‑34 (MQ=255) gAAGCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:1993208‑M2/1‑29 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:345078‑M2/1‑29 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:3784707‑M2/1‑29 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagccgtttgc < 1:2101534‑M2/65‑37 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac < 1:2977278‑M2/65‑39 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:4040852‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:469123‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:387817‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:3162100‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1358153‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:3657099‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:634585‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1552576‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:10938‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1544718‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:888723‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1808951‑M2/1‑24 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 1:381341‑M2/65‑44 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg > 1:364228/1‑65 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccgtttgcacagtgcgatc < 1:3881467‑M2/65‑48 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:3350054/1‑65 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:48841‑M2/65‑53 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttg < 1:2485802‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:570834‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:791522‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:3396915‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgcttgcacagtgccatccgatttg < 1:1363273‑M2/65‑55 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:1885884/1‑65 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:197357‑M2/1‑10 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:980932/65‑1 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:3252761/65‑1 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat < 1:2783387‑M2/65‑59 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:1278946/1‑65 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:2362191/1‑65 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:4002441‑M2/65‑60 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:1804158‑M2/65‑60 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:1933358‑M2/65‑60 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg > 1:3742830‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:919355‑M2/65‑61 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg > 1:1552142‑M2/1‑5 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:811623‑M2/65‑61 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:2612806‑M2/65‑61 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttaatatcg < 1:1982214‑M2/65‑61 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:3435171‑M2/65‑62 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:1643173‑M2/65‑62 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:2972821/65‑1 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 1:3466735‑M2/65‑65 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:479985/1‑65 (MQ=255) | CAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209539‑1209666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |