| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,374,040 | 0 | C | T | 40.5% | 13.9 / 42.8 | 37 | F273F (TTC→TTT) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| Reads supporting (aligned to +/- strand): ref base C (7/15); new base T (0/15); total (7/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.79e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAA > NC_000913/1373979‑1374104 | aCAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTtgatc > 1:1365084/1‑65 (MQ=255) aCCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGGTTTTCATCattat > 1:922526/1‑65 (MQ=255) aCCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCattat > 1:3643413/1‑65 (MQ=255) aCCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGAACTCGGGGGGGGTCTTCTTAattat > 1:3945959/1‑65 (MQ=255) tgcttttAGTGATTTCGGAAAAGGCGCGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGt < 1:1677685/65‑1 (MQ=255) tccctttAATGATTAGGAAAAAGGCGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGt < 1:778386/63‑1 (MQ=255) gcctttAATGGTTGAGAAAAAGCCGGGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTc < 1:607765/65‑1 (MQ=255) gcctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGt < 1:868140/65‑1 (MQ=255) gcctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGt < 1:73475/65‑1 (MQ=255) cctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:280525/65‑1 (MQ=255) cctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:233270/65‑1 (MQ=255) cctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:531633/65‑1 (MQ=255) cctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:478792/65‑1 (MQ=255) cctttAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTc < 1:401551/65‑1 (MQ=255) tAATGATTGAGAAAGAGGCGCGTCGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTct < 1:1322241/65‑1 (MQ=255) aaTGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTct < 1:54565/65‑1 (MQ=255) aaTGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTct < 1:371406/65‑1 (MQ=255) aaTGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTct < 1:850773/65‑1 (MQ=255) aTGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTGATCATTATTTTCGCTGTCATTctg > 1:2656738/1‑65 (MQ=255) tGATTTAGGAAAAGCGGCGGCGGTCTCGGTGGTGCTCTTCATCATTATTTTCGCCGTCATTctgc > 1:3468165/1‑65 (MQ=255) tGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTctgc < 1:359470/65‑1 (MQ=255) tttAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGa < 1:21285/65‑1 (MQ=255) tAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGAcc < 1:2005200/65‑1 (MQ=255) gggaaaGCGGTGTAGATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAgg < 1:314810/62‑1 (MQ=255) gAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAgg < 1:2435602/65‑1 (MQ=255) aaaGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGaa < 1:2886206/65‑1 (MQ=255) gcggcgtcgATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACgg < 1:1047590/65‑1 (MQ=255) gtcgATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGaa < 1:153796/63‑1 (MQ=255) gtagATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGaa < 1:1056791/62‑1 (MQ=255) cgATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:3534090/65‑1 (MQ=255) cgATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:825436/65‑1 (MQ=255) cgATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:1690612/65‑1 (MQ=255) agATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:519013/64‑1 (MQ=255) agATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAAcc < 1:3089781/64‑1 (MQ=255) agATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAAAGGGTGaaaa < 1:1440816/64‑3 (MQ=255) agATCTCGGTGGT‑CGCCGTATCATTATTTTCGCTGTCATTCTGCTGAAAAGGAAAAGGGTGaaaa < 1:983827/64‑3 (MQ=255) gtggtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATgg > 1:121684/1‑65 (MQ=255) ggtgCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGca > 1:304428/1‑65 (MQ=255) gCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaaca > 1:706779/1‑65 (MQ=255) gCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaaca > 1:2096714/1‑65 (MQ=255) tctTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGcaacaag > 1:3643754/1‑64 (MQ=255) tctTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACaaa > 1:3520500/1‑65 (MQ=255) tcatcaTTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATaa > 1:2640347/1‑65 (MQ=255) catcatTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATaaa < 1:3097116/65‑1 (MQ=255) | ACAAAACCGCCTTTGCCTTTAATGATTTAGGAAAAGCGGCGGCGATCTCGGTGGTGCTCTTCATCATTATTTTCGCTGTCATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAA > NC_000913/1373979‑1374104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |