| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,702,245 | 0 | A | C | 34.6% | 49.5 / 10.3 | 26 | T5P (ACC→CCC) | add | adenosine deaminase |
| Reads supporting (aligned to +/- strand): ref base A (16/1); new base C (0/9); total (16/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.20e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGA > NC_000913/1702182‑1702309 | cTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATaccac < 1:3064279/65‑1 (MQ=255) tttGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATaccacc < 1:1843612/65‑1 (MQ=255) gTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTg > 1:2114533/1‑65 (MQ=255) tttttATAATGGTGCGCATTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATCCCCCCCTGc < 1:1181634/65‑1 (MQ=255) tttttATAATGGTGCGCACTTTTATATCCAAAAAAAGAGTGCGCCCATGATTGATACCCCCCTGc < 1:3409916/65‑1 (MQ=255) ttttATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACTACCCTGcc > 1:712585/1‑65 (MQ=255) aTGGTGGGCTCTTTTATATCAAGAAAAAGAGTGCGACCATGATTGATCCCCCCCTGCCATTAACt < 1:2049107/65‑1 (MQ=255) aTGGTGCGCATTTTGATATCCAGAAAAAGAGTGCGACCATGATTGATCCCCCCCTGCCATTAACt < 1:1364078/65‑1 (MQ=255) aTGGTGCGCACTTTTATCTCCAGAAAAAGAGTGCGCCCATGATTGATACCCCCCTGCCATTAACt < 1:1271511/65‑1 (MQ=255) aTGGTGCGCACTTTTATATCAAAAAAAAGAGTGCGACCATGATTGATCCCCCCCTGCCATGAACt < 1:2094670/65‑1 (MQ=255) ggTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGa > 1:3519289/1‑65 (MQ=255) ggTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGa > 1:2998960/1‑65 (MQ=255) ggTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGa > 1:1243082/1‑65 (MQ=255) gggcgcACTTTTATATCCAGAAAAGGGGTGGGGCCATGATTGATCCCCCCCTGCCATTAACTGat < 1:1403179/63‑1 (MQ=255) gcgcATTTTTATATCCAGAAAAAGAGTGCGACCATAATTGATACCCCCCTGCCATTAACTGatat < 1:2664703/65‑1 (MQ=255) cTTTTATATCCAGAAAAAGAGTGCGCCCATGATTGATCCCCCCCTGCCATTAACTGATATCCATc < 1:2162924/65‑1 (MQ=255) atatCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCAc > 1:2175630/1‑65 (MQ=255) tatCAAAAAAAAGGTTGGGACCGTGATTGATCCCCCCCTGCCATTAACTGATATCCATCGCCAcc < 1:2616963/65‑1 (MQ=255) atCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCt > 1:2258439/1‑65 (MQ=255) ccAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTg > 1:2004779/1‑65 (MQ=255) ccAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTg > 1:2231679/1‑65 (MQ=255) aaaaaGAGTGCGACCATGATTAACACCGCCCTGCCATTAACTGATATCCATCGCCACCTTGATgg < 1:1607650/65‑1 (MQ=255) aaaGAGTGCGCCCATGATTGACCCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCa < 1:2654592/65‑1 (MQ=255) agagTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAAc > 1:732429/1‑65 (MQ=255) agagTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAAc < 1:266629/65‑1 (MQ=255) gagTGCGACCATGATTGATCCCCCCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACa < 1:1577982/65‑1 (MQ=255) gagTGCGACCATGATTGATACCCCCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACa < 1:707841/65‑1 (MQ=255) agTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAt > 1:3909330/1‑65 (MQ=255) agTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAt > 1:204881/1‑65 (MQ=255) ttGCGACCATTATTGATCCCCCCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAtt < 1:4047293/64‑1 (MQ=255) aCCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTcc > 1:2201018/1‑65 (MQ=255) gattgatCCCCCCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGa < 1:975168/65‑1 (MQ=255) ttgatACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGAcc > 1:2021015/1‑65 (MQ=255) gatACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCAt > 1:581658/1‑65 (MQ=255) atcccaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCAtt < 1:3068100/62‑1 (MQ=255) tACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTc > 1:41338/1‑65 (MQ=255) accaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCt > 1:1149687/1‑65 (MQ=255) accaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCt > 1:3658837/1‑65 (MQ=255) accaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCt > 1:3529440/1‑65 (MQ=255) accaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCt > 1:3504092/1‑65 (MQ=255) accaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCt > 1:1185754/1‑65 (MQ=255) ccaccCTGCCATTAACTGATATTCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCtc > 1:611807/1‑64 (MQ=255) ccaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCtt > 1:2507766/1‑65 (MQ=255) ccaccCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCtt > 1:135131/1‑65 (MQ=255) accCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGa > 1:2415366/1‑65 (MQ=255) accCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGa > 1:1092218/1‑65 (MQ=255) | CTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGA > NC_000913/1702182‑1702309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |