| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,875,838 | 0 | A | C | 40.0% | 23.7 / 12.5 | 20 | T56P (ACC→CCC) | nimT | 2‑nitroimidazole exporter |
| Reads supporting (aligned to +/- strand): ref base A (11/1); new base C (0/8); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCGTTACTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTGG > NC_000913/1875774‑1875902 | aCCGTTACTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGacca > 1:289663/1‑65 (MQ=255)aCCGTTACTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGacca > 1:386865/1‑65 (MQ=255)aCCGTTACTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGacca > 1:1618641/1‑65 (MQ=255) aCTGAATACGTTTCGTTCCGCTTCCTCGCTGGCGACAGCCCAACCCGGCTTATTGACCCCCCTGc < 1:3857585/65‑1 (MQ=255) cTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTggc > 1:3536662/1‑63 (MQ=255) tGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCCGCTTATTGACCAACCTGCCa > 1:2613710/1‑65 (MQ=255) tGGATAAGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAAACGGCTTATTGACCACCCTGCCa > 1:2628117/1‑65 (MQ=255) taTACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAACCCGGCTTATTGCCCCCCCTGCCatt < 1:863604/64‑1 (MQ=255) aTTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGc > 1:2954951/1‑65 (MQ=255) ttCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCttcg > 1:1099098/1‑63 (MQ=255) tCCGCTTACTCGCTGACGACAGCGCAACCCGGCTTATTCCCCCCCCTGCCATTATTGGCCTTTgc < 1:2814081/65‑1 (MQ=255) tCCGCTTACTCGCTGACGACAGCGAAAACCGGCTTATTGACCCCCCTGCCATTATTGGCCTTTgc < 1:3274729/65‑1 (MQ=255) tCCGCTTACCCGCTGCCGACAGCGCAAACCGGCTTATTGCCCCCCCTGCCATTATTGGCCTTTgc < 1:1439679/65‑1 (MQ=255) tCCGCTGACTCGCTGACGACAGCGCAAACCGGCTTATTGACCCCCCTGCCATTATTGGCCTTTgc < 1:1640503/65‑1 (MQ=255) cccGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCCCCCTGCCATTATTGGCCTTTgc < 1:1626278/64‑1 (MQ=255) ttACTCGCTGGCGACGCCGCAAACCGGCTTATTGACCGCCCTGCCATTATTGGCCTTTGCGCTaa < 1:2046432/65‑1 (MQ=255) ttACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTaa < 1:4016141/65‑1 (MQ=255) ttACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTaa < 1:1837027/65‑1 (MQ=255) ccTCGCTGACGACAGCGCAACCCGTCTTATTGCCCCCCCTGCCATTATTGGCCTTTGCGCTAAtc < 1:2192326/64‑1 (MQ=255) cgcacgacAGCGCAAACCGGCTTATTCCCCCCCCTGCCATTATTGGCCTTTGCGCTAATCTCAcc < 1:1584362/62‑1 (MQ=255) cTGACGACAGCGCAACCCGGCTTATTGCCCCCCCTGCCATTATTGGCCTTTGCGCTAATCTCAcc < 1:3299899/65‑1 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGGCTGTGGGCTAATTTCACCTTTGGc > 1:1639859/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTgcc > 1:3600128/1‑63 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:320523/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:2159792/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:3632235/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:2039687/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:643355/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:1370890/1‑65 (MQ=255) acAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGc > 1:1152639/1‑65 (MQ=255) ggcgcAACCCGTCTTATTGCCCCCCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTg < 1:2544161/64‑1 (MQ=255) gcgcAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGc > 1:3532294/1‑65 (MQ=255) cccAACCCGGTTTATTGCCCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGcc < 1:2473238/63‑1 (MQ=255) ccGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTa > 1:2520148/1‑65 (MQ=255) tttGCCCCCCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGAc < 1:883047/64‑1 (MQ=255) aTTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCCGTAGcgcgcc > 1:2172572/1‑63 (MQ=255) tGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGt > 1:1962812/1‑65 (MQ=255) accCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTgg > 1:2149701/1‑65 (MQ=255) accCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTgg > 1:1321682/1‑65 (MQ=255) accCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGGAGCGCGACGTTTTgg > 1:3029793/1‑65 (MQ=255) | ACCGTTACTGGATACGATTCGTTCCGCTTACTCGCTGACGACAGCGCAAACCGGCTTATTGACCACCCTGCCATTATTGGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTGG > NC_000913/1875774‑1875902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |