| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,619,100 | Δ20 bp | intergenic (‑192/‑1) | marC ← / → marR | inner membrane protein MarC/DNA‑binding transcriptional repressor MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1619100 | 1619119 | 20 | 64 [0] | [1] 65 | marC/marR | inner membrane protein MarC/DNA‑binding transcriptional repressor MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1619099 | 0 (0.000) | 62 (1.820) | 21/110 | 0.2 | 99.2% | intergenic (‑191/‑21) | marC/marR | inner membrane protein MarC/DNA‑binding transcriptional repressor MarR |
| ? | NC_000913 | 1619120 = | 1 (0.030) | coding (1/435 nt) | marR | DNA‑binding transcriptional repressor MarR | |||||
AAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1619029‑1619099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaactaatGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG > NC_000913/1619120‑1619179 AAAACTTGGCAGCGGTCAATTCATTCATTTGACTTATACTGGCCTGGGCAATATTATCCCCTGCA < 1:1369548/65‑1AAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCA > 1:2427244/1‑65 ATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGA > 1:3006746/1‑65 ATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGA > 1:1934013/1‑65 ATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGA > 1:313701/1‑65 GTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAG < 1:2238060/65‑1 TCAATTCATTCATTTGGCTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGT < 1:3219103/65‑1 TCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAG > 1:874980/1‑65 TTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGA < 1:1436613/65‑1 TTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGA < 1:1471308/65‑1 TTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGA < 1:1120752/65‑1 TTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGT < 1:834927/65‑1 CTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAA > 1:1218600/1‑65 CTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAA > 1:1357853/1‑65 ATACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGA < 1:613293/65‑1 TACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAA < 1:3119127/65‑1 TACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAA < 1:1161415/65‑1 TACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAA < 1:2401307/65‑1 ACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA > 1:403737/1‑65 ACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA > 1:234214/1‑65 ACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA > 1:328373/1‑65 ACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA > 1:3291385/1‑65 ACTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA > 1:2924543/1‑65 CTTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGCACCAGCGATCTGTTCAATGAAAT > 1:1047351/1‑65 CTTGCCTCGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAAT > 1:619214/1‑65 TTGCCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATT < 1:1020489/65‑1 CCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCGGCGATCTGTTCAATGAAATTATT > 1:223655/1‑65 CCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGGTCTGTTCAATGAAATTATT > 1:1528769/1‑65 CCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATT > 1:3175062/1‑65 CCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATT > 1:543101/1‑65 CCTGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATT > 1:255543/1‑65 gGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCC < 1:497170/64‑1 TGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCC < 1:1611273/65‑1 TGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCC < 1:2003134/65‑1 TGGGCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAACGATCTGTTCAATGAAATTATTCC < 1:3088048/65‑1 GCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATT > 1:1376623/1‑65 GCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATT > 1:1549318/1‑65 GCAATATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATT > 1:3032226/1‑65 ATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTC > 1:117966/1‑65 ATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTC > 1:2752187/1‑65 ATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTC > 1:2399366/1‑65 ATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTC > 1:3137256/1‑65 ATTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATCATTCCATTGGGTC > 1:1909017/1‑65 TTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCG < 1:2539530/65‑1 TTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCG < 1:1160947/65‑1 TTATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTCCAATGAAATTATTCCATTGGGTCG < 1:1334796/65‑1 TATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGC < 1:2624448/65‑1 TATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGC < 1:3191449/65‑1 TATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGC < 1:1691776/65‑1 TATCCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATGCCATTGGGTCGC < 1:870645/65‑1 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:996724/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:3051594/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:245910/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:2618773/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:3168947/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:315898/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:2983611/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTA > 1:3042728/1‑65 CCCCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGCCGCTTA > 1:3274391/1‑65 CCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAAT > 1:1751075/1‑65 CCTGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAAT > 1:1404995/1‑65 TGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCC < 1:2840590/65‑1 TGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCC < 1:1852390/65‑1 TGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCC < 1:1010413/65‑1 CTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG < 1:2763197/65‑1 CTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG > 1:2279176/1‑65 AAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1619029‑1619099‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaactaatGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG > NC_000913/1619120‑1619179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |