| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,185,956 | Δ36 bp | coding (607‑642/4224 nt) | rpoC → | RNA polymerase subunit beta' |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4185956 | 4185991 | 36 | 47 [0] | [0] 47 | rpoC | RNA polymerase subunit beta' |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4185955 | 0 (0.000) | 46 (1.230) | 23/120 | 0.2 | 100% | coding (606/4224 nt) | rpoC | RNA polymerase subunit beta' |
| ? | NC_000913 | 4185992 = | 0 (0.000) | coding (643/4224 nt) | rpoC | RNA polymerase subunit beta' | |||||
GCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4185893‑4185955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA > NC_000913/4185992‑4186053 GCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAA > 1:1259797/1‑65GCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAA > 1:2508596/1‑65 AATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGA < 1:1180799/65‑1 TCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACC > 1:1734942/1‑65 GGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGC < 1:1619867/65‑1 GCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAACAAGCTGACCAAGCG > 1:3127484/1‑65 GCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCG > 1:34194/1‑65 GCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCG > 1:2915012/1‑65 CTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGT > 1:1868207/1‑65 CTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGT > 1:1621481/1‑65 CTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGT > 1:1608852/1‑65 CTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGT < 1:9522/65‑1 GCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCA > 1:3196488/1‑65 CTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAA < 1:3191272/65‑1 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:1871830/1‑65 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:2287004/1‑65 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:1107845/1‑65 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:1160693/1‑65 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:1521755/1‑65 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGATGCGTAAAAAGCTGACCAAGCGTATCAAACTG > 1:1453613/1‑65 GAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAGAGCTGACCAAGCGTATCAAACTGC < 1:2606968/65‑1 cGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:101297/2‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCGAGCGTATCAAACTGCT > 1:2952717/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:1853113/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:3261764/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:1497657/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:1996929/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCT > 1:1918298/1‑65 GATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGC > 1:2871298/1‑65 ATCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCG < 1:1500292/65‑1 TCTGGAGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGT > 1:265515/1‑65 AGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTT > 1:940706/1‑65 AGCAAGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTT > 1:3139754/1‑65 AGAGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGT < 1:549567/65‑1 AGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCT > 1:3134475/1‑65 AGTGCGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCT > 1:1824317/1‑65 CGAGCAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:1125655/65‑1 CGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:1751548/65‑1 CGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:3268034/65‑1 CGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:3200453/65‑1 CGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:1505288/65‑1 CGAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:23688/65‑1 GAACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAA > 1:431451/1‑65 AACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAAC < 1:2398886/65‑1 ACAGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACA > 1:112331/1‑65 AGCTGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAA < 1:2217358/65‑1 CGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA < 1:972257/65‑1 GCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4185893‑4185955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA > NC_000913/4185992‑4186053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |