| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 37 (0.740) | 12 (0.280) | 11/116 | 1.1 | 21.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 56 (1.290) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > NC_000913/4542623‑4542757 | gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:516718‑M1/60‑68 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:877632/68‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1397012/68‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt > 1:106997‑M1/1‑67 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:3290069/68‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:2974945/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga < 1:2285536‑M1/68‑7 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga < 1:3984104‑M1/68‑7 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:253390‑M1/1‑62 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:3057934/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:885444/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:3265160/1‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:714885/68‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:2867498/68‑1 (MQ=255) cgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCat < 1:612150‑M1/19‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat > 1:220516/1‑68 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:3338063/1‑68 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1029347/1‑68 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 1:4003218/1‑68 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:435972‑M1/68‑15 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata < 1:488919‑M1/25‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:1111150‑M1/68‑17 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:91625/1‑68 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:2016105/1‑68 (MQ=255) ctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:3785451‑M1/28‑1 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1323015/68‑1 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:230208/68‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:3897293/1‑68 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg < 1:3466551/68‑1 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg < 1:3371901/68‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:4011368/68‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTAGGGCCAAACTGTCCATATCATAAATAAGt > 1:1584320/1‑68 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 1:723288‑M1/35‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 1:276081/1‑68 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:293540/68‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacaaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:1900642‑M1/37‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:86875‑M1/1‑39 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:287955‑M1/41‑1 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:945284‑M1/68‑34 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:3321360‑M1/46‑1 (MQ=255) cccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa < 1:1264460‑M1/49‑1 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTGCGTATTTTTTCTCAAGc < 1:819483/68‑1 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:709733/68‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:279671‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa < 1:3787170/68‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa < 1:2202401/68‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 1:839410/68‑1 (MQ=255) taaataCAAGACAATCGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:3853907/1‑68 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa > 1:61572/1‑68 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:1704206/1‑68 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATCTTTTCTCAAGCATAAAAat > 1:3587448/1‑68 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt > 1:324346/1‑68 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCGTAAAAATATTaa < 1:3872440‑M1/64‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:3563317‑M1/1‑13 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:3383656/1‑68 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:1951685/1‑68 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta < 1:1714136‑M1/68‑59 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta > 1:823999‑M1/1‑10 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa > 1:3543961/1‑68 (MQ=255) tgtggccattttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1500329‑M1/65‑61 (MQ=255) tGGGGCCAttttgcctcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:2882071‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:2787506‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:596659‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:40242‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1778708‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:2345634‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1378120‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:3332984‑M1/1‑8 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:1495187‑M1/68‑1 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2824577‑M1/68‑1 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:2044419‑M1/68‑1 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:898323‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:634960‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:99314‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1800629‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1883358‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1980178‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:3755870‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1291489‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:271450‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcctaatat < 1:62831‑M1/68‑63 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt > 1:2635377‑M1/1‑5 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatc > 1:2822128‑M1/1‑5 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:1498770‑M1/1‑68 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:735254‑M1/68‑1 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:83855‑M1/1‑68 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:1871388‑M1/68‑66 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:168073‑M1/68‑66 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct > 1:3320058‑M1/1‑3 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct > 1:3323705‑M1/1‑3 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa < 1:333584‑M1/68‑1 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa < 1:1976511‑M1/68‑1 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:3314234‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:834980‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:1518147‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:2930772‑M1/68‑68 (MQ=255) | AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > NC_000913/4542623‑4542757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |