| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,536,398 | C→A | G63C (GGC→TGC) | ompR ← | DNA‑binding transcriptional dual regulator OmpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,536,398 | 0 | C | A | 98.2% | 205.1 / ‑4.3 | 54 | G63C (GGC→TGC) | ompR | DNA‑binding transcriptional dual regulator OmpR |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (25/28); total (26/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
CGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAGTCAGCAGGCG > NC_000913/3536333‑3536461 | cGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGTAAATCGACAAGCAAt < 1:2466519/68‑1 (MQ=255)cGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAAt < 1:1046408/68‑1 (MQ=255) gCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATc > 1:3362193/1‑68 (MQ=255) ccGTCTCCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCt < 1:2465365/68‑1 (MQ=255) aCCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCAcc < 1:711423/68‑1 (MQ=255) cATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAg < 1:3274603/68‑1 (MQ=255) cATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAg < 1:2323643/68‑1 (MQ=255) aTAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAgg < 1:1312494/68‑1 (MQ=255) aTAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAgg < 1:731784/68‑1 (MQ=255) aTAATGATCGGCATCGGGTTGCTCTGAATACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAgg < 1:3399029/68‑1 (MQ=255) tAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGt < 1:375860/68‑1 (MQ=255) aTGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAACCTTCACCAGGTaa > 1:2708839/1‑68 (MQ=255) tGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAAc > 1:851513/1‑68 (MQ=255) tGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAAc < 1:853966/68‑1 (MQ=255) gATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACa > 1:1101134/1‑68 (MQ=255) gATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACa > 1:1388261/1‑68 (MQ=255) gATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACa > 1:1794917/1‑68 (MQ=255) gATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACa > 1:155287/1‑68 (MQ=255) aTCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACAt < 1:626535/68‑1 (MQ=255) aTCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACAt < 1:1691932/68‑1 (MQ=255) cGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTa > 1:1827693/1‑68 (MQ=255) cATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAAt < 1:3331347/68‑1 (MQ=255) cATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAAt < 1:3138596/68‑1 (MQ=255) cATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAAt < 1:278459/68‑1 (MQ=255) cATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAAt < 1:2158611/68‑1 (MQ=255) aTCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATc > 1:2653368/1‑68 (MQ=255) ggTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGt < 1:4036551/68‑1 (MQ=255) gTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTa > 1:3882299/1‑68 (MQ=255) gTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTa > 1:2191429/1‑68 (MQ=255) ttGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTAc < 1:1194922/68‑1 (MQ=255) tGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTAcc < 1:357343/68‑1 (MQ=255) tGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTAcc < 1:3274320/68‑1 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACCTTAAATCCAGTACCATa > 1:3724110/1‑68 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTAcctgt > 1:3046784/1‑65 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATa > 1:1176923/1‑68 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATa > 1:496738/1‑68 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATa > 1:2472978/1‑68 (MQ=255) tctGACTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATa > 1:1955853/1‑68 (MQ=255) aCTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGAt < 1:525720/68‑1 (MQ=255) cTACGAAGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGAtc > 1:1493499/1‑67 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg > 1:1452306/1‑68 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg < 1:3074071/68‑1 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg > 1:724172/1‑68 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg > 1:1758240/1‑68 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg > 1:2374212/1‑68 (MQ=255) aaGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAg > 1:3922373/1‑68 (MQ=255) aGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGa > 1:1856239/1‑68 (MQ=255) aGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGa > 1:1173182/1‑68 (MQ=255) aGACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGa > 1:1681161/1‑68 (MQ=255) gACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGAt < 1:718944/68‑1 (MQ=255) gACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGAt < 1:2738298/68‑1 (MQ=255) gACGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGAt < 1:537783/68‑1 (MQ=255) cGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTc > 1:3624148/1‑68 (MQ=255) cGTCGGCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTc > 1:835341/1‑68 (MQ=255) gCAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAg > 1:868361/1‑68 (MQ=255) cAAATCGACAAGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAGt < 1:1823387/68‑1 (MQ=255) aaaaGCCATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAGTCAGCAgg < 1:2879177/66‑1 (MQ=255) aaGCAATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAGTCAGCAGGCg < 1:3482805/68‑1 (MQ=255) | CGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTACCATAAGATGGAAAGATTCACGAGTCAGCAGGCG > NC_000913/3536333‑3536461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |