| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 6 (0.140) | 35 (1.120) | 15/96 | 0.3 | 80.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 12 (0.380) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
TCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209538‑1209666 | tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 1:2819973/65‑1 (MQ=255)tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGAGACACCCACAGGTAATGCagag > 1:2716078/1‑65 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:1205486‑M2/1‑64 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:2116858‑M2/1‑64 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:2405312‑M2/65‑4 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:1630780‑M2/1‑58 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:2322109‑M2/1‑58 (MQ=255) ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 1:2643754‑M2/1‑53 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCCGAGCCTTCTCCCAAACCAACg > 1:2009316/1‑65 (MQ=255) gCCACGGAAGCGGGACACCAACAGGCAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:1308973‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagaggc < 1:2675056‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:218399‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:172297/1‑65 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:209132/1‑65 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCCTCTCCCAAACAAACGTTTATGAAAATg > 1:2427509/1‑65 (MQ=255) ccACGGAGCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1384814‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1763534‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:299740‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:3151289‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:3353428‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:2715681‑M2/1‑34 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:3060905‑M2/1‑29 (MQ=255) gggACCCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:2012703‑M2/1‑24 (MQ=255) gggACACCAACAGGTATTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:2948664‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:789121‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:668579‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:3153836‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:593114‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:2402967‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1655879‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:2163958‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:17537‑M2/1‑24 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc > 1:2148688‑M2/1‑22 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 1:480826‑M2/65‑44 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg > 1:566019/1‑65 (MQ=255) cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca > 1:643148‑M2/1‑20 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat < 1:2003842‑M2/65‑47 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:1245601/1‑65 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:3124948/65‑1 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 1:1732273‑M2/1‑15 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:831233‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:2227512‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattcg < 1:2039101‑M2/65‑55 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:227719/1‑65 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:2543502/65‑1 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat < 1:1528576‑M2/65‑59 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatctgatttgatatc < 1:1044077‑M2/65‑60 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:3365264‑M2/65‑60 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:2062880‑M2/65‑61 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:2811523/1‑65 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:3133141‑M2/65‑62 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:3236245‑M2/65‑62 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 1:3208306‑M2/65‑65 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCCAATGGCATCATTCCTGCtt > 1:1689408/1‑65 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:1835006/1‑65 (MQ=255) | TCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209538‑1209666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |