| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 18,805 | Δ991 bp | IS1‑mediated | [nhaR] | [nhaR] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 18805 | 20499–19797 | 993–1695 | 55 [0] | [5] 6 | [nhaR]–[insA‑1] | [nhaR],insB‑1,[insA‑1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 18804 | 0 (0.000) | 55 (1.320) | 27/134 | 0.1 | 100% | coding (90/906 nt) | nhaR | DNA‑binding transcriptional activator NhaR |
| ? | NC_000913 | 257908 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
ACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/18740‑18804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA > NC_000913/257908‑257972 ACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGCGGCGCTTGGT > 1:605245/1‑68ACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGT > 1:854508/1‑68 CCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTA > 1:856962/1‑68 CCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTA > 1:3088941/1‑68 CACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAA > 1:1325799/1‑68 TTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGA < 1:1011003/68‑1 TTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGA < 1:582789/68‑1 TTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGA < 1:3097311/68‑1 TTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGA < 1:3289866/68‑1 TTGGATTGCTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGA < 1:1741824/68‑1 ATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCC > 1:1557085/1‑68 TACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAA > 1:1691642/1‑68 TACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAA > 1:2935733/1‑68 TACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAA > 1:1768740/1‑68 CTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACT < 1:533297/68‑1 CTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACT < 1:1784508/68‑1 CTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACT < 1:578476/68‑1 CTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACT < 1:1401538/68‑1 CTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACT < 1:2656091/68‑1 CTTCTGGCATGTCTAGAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGGAATGACTCCAACT < 1:3073756/68‑1 TTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAAGTT > 1:1171011/1‑68 TTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTT > 1:1635809/1‑68 TTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTT > 1:3372377/1‑68 TCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTA < 1:3128395/68‑1 GCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGA > 1:2635323/1‑68 CATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCCACTTATTGAT > 1:2180639/1‑68 CATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGAT > 1:2982740/1‑68 CATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGCAGGCGCTTGGTAATGACTCCAACTTATTGAT > 1:1288713/1‑68 ATGTCTATAAAGAAGGTTCCGTGGTTGGCGCCGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATA < 1:1781611/68‑1 TCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTG < 1:1198368/68‑1 TCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTG < 1:713835/68‑1 TCTATAAAGAAGGTTCCGGGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTG < 1:1852801/68‑1 ATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTT < 1:82224/68‑1 AGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATG < 1:155183/68‑1 GAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < 1:262291/68‑1 GAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGT > 1:80335/1‑68 GTTCCGCGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGCTTTATGTTCAG > 1:2526260/1‑68 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2930090/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2416895/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:1359163/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2090719/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:471134/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:3347010/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:3325660/68‑1 TTCCGTGGTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2011288/68‑1 GTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC < 1:586407/68‑1 GTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC < 1:2884504/68‑1 GTTGGCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC < 1:2588304/68‑1 GCGCAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAT > 1:3167543/1‑68 GCAGCGGAGGCGCTTGGTAATGACTCCAAGTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA > 1:284151/1‑68 CAGCGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAC < 1:2661250/68‑1 CGGAGGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT < 1:3226235/68‑1 GGCGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA > 1:2049037/1‑68 CGCTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:292179/1‑68 CTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA > 1:1887211/1‑68 ACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCGTGGTTGGCGCAGCGGAGGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/18740‑18804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA > NC_000913/257908‑257972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |