| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1603798 | 31 (0.750) | 6 (0.140) | 3/134 | 2.9 | 16.2% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| ? | NC_000913 | 1603802 = | 31 (0.750) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1603752‑1603798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA > NC_000913/1603802‑1603841 TTGCAGCCTGCGTGCTGGGCGGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGC < 1:1223499/68‑1 tgGTGCTGGGCGGCATTATTTTGCGCGGTGGTCGCCGTATCATTGGTGCGGTACTCGGCGCATGGTTC < 1:2305084/66‑1 GCTGGGCGGCATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGA < 1:2925744/68‑1 gaGCATTGTTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA < 1:2053810/66‑1 gGGCATTAGTTTCCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA < 1:1976985/67‑1 CGGAATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA < 1:157/68‑1 TTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1603752‑1603798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGA > NC_000913/1603802‑1603841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |