| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 57 [0] | [0] 53 | insB‑5–insA‑5 | insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 47 (1.290) | 28/118 | 0.1 | 100% | intergenic (‑305/+16) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:370157‑M1/1‑68 (MQ=255)ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:2137363‑M1/1‑68 (MQ=255)ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:3024516‑M1/1‑68 (MQ=255)ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:3038367‑M1/1‑68 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 1:2107799‑M1/68‑2 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 1:3203903‑M1/1‑66 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 1:1735097‑M1/1‑66 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGca > 1:3057476‑M1/1‑66 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata > 1:133530‑M1/1‑64 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa > 1:1626811‑M1/1‑63 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatagg < 1:2402444‑M1/68‑7 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag < 1:1967580‑M1/68‑7 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag < 1:3045850‑M1/68‑7 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag < 1:113739‑M1/68‑7 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt < 1:1168462‑M1/68‑8 (MQ=255) tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt > 1:1132823‑M1/1‑53 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg < 1:3152061‑M1/68‑18 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg < 1:478783‑M1/68‑18 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 1:1726064‑M1/1‑50 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 1:2902964‑M1/1‑50 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt > 1:2319458‑M1/1‑48 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg < 1:2659692‑M1/68‑25 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg < 1:2648912‑M1/68‑25 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 1:1709778‑M1/68‑26 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 1:2563009‑M1/68‑26 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta > 1:260962‑M1/1‑40 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:2918833‑M1/68‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:651373‑M1/1‑38 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:1047628‑M1/1‑38 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:2035951‑M1/1‑38 (MQ=255) aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc > 1:132099‑M1/1‑36 (MQ=255) gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca > 1:1970191‑M1/1‑35 (MQ=255) tCACACAAAACACTCAATTACTTACCATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:2520654‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:3113118‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:2748106‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:2827649‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:666736‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:1250611‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:3098445‑M1/1‑33 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt > 1:241444‑M1/1‑29 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt < 1:2130863‑M1/68‑40 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt < 1:711239‑M1/68‑40 (MQ=255) caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt < 1:3269229‑M1/68‑41 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 1:2607879‑M1/1‑24 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 1:2072575‑M1/1‑24 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 1:1064650‑M1/1‑24 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa > 1:1341229‑M1/1‑23 (MQ=255) ttACTTAACATAAACGtataagtcatccttttgttttgggtgtatttcaatctgttaaaacgtttttc > 1:2604577‑M1/1‑16 (MQ=255) cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct < 1:3237950‑M1/68‑56 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 1:197069‑M1/1‑12 (MQ=255) tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac < 1:472807‑M1/68‑58 (MQ=255) aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc > 1:157376‑M1/1‑9 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 1:2131533‑M1/1‑7 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagccag > 1:993604‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:3376826‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:2725295‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:798010‑M1/1‑2 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |