| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,280,704 | 0 | A | C | 36.4% | 23.5 / 13.0 | 23 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| Reads supporting (aligned to +/- strand): ref base A (7/7); new base C (0/8); total (7/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCT > NC_000913/2280639‑2280771 | ttACCCTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:2916488/68‑1 (MQ=255)ttACCCTTCGCCCATAACAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:2266292/68‑1 (MQ=255)ttACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:800434/68‑1 (MQ=255)ttACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:2126751/68‑1 (MQ=255)ttACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:1976019/68‑1 (MQ=255) ccTTCGCCCATATCAGAAAAAAGCCGTGGATGCCCCCCTCAACCATTTTCGTCGTCATAAACCCCCTg < 1:544421/67‑1 (MQ=255) ttCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGcc < 1:292273/68‑1 (MQ=255) ccATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCCTTTTCGTCGTCATAAAACCCCTGCCGTTAt > 1:2007950/1‑68 (MQ=255) tatCAGCAAGAAGCCGTGGATGCCCCGCTCAACCATTTTCGTGGTCATAAACCCCCTGCCGTTATCGt < 1:3353621/68‑1 (MQ=255) gCAAGAAGCCGTGGATGCCCCGCTCAACCATTTTCGTCGTCAAAAACCCCCTGCCGTTATCGtgctgc < 1:986556/68‑1 (MQ=255) gCAAGAAGCCGTGGATGCCACGCTCAACCATTTTGTTCGTAATAAAACCCCTGCCGTTATCGtgctgc < 1:3341365/68‑1 (MQ=255) gCAAGAACCCGTGGATGCCACGCTCAACCATTTTCGTCGTCAAAAACCCCCTGCCGTTATCGtgctgc < 1:1127443/68‑1 (MQ=255) aagaagCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCTTGCCGTTATCGTGCTGccc > 1:2961929/1‑68 (MQ=255) aagaagCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGccc > 1:1740991/1‑68 (MQ=255) aagaagCCATGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGccc > 1:292550/1‑68 (MQ=255) aaaaagCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAACCCCCCTGCCGTTATCGTGCTGccc < 1:255877/65‑1 (MQ=255) aggCCGTGGATGCCCCCCTCAACCATTTCCGTCGTCATAACCCCCCTGCCGTTATCGTGCTGCCCAcc < 1:1479655/66‑1 (MQ=255) gATGCCACGCTCACCCATTTTCGTCGTAAAAAACCCCCTGCCGTTATCGTGCTACCCACCGGCGCAgg < 1:2618860/68‑1 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGt > 1:3122357/1‑68 (MQ=255) ccGCCCAACCATTTTCGTCGTCATAAAGCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:1679619/67‑1 (MQ=255) cGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGc > 1:1338437/1‑68 (MQ=255) gCTCAACCTTTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGcc < 1:1007708/68‑1 (MQ=255) cTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTCCCCACCGGCGCAGGTAAAAGCCt > 1:754576/1‑68 (MQ=255) aCCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTg > 1:389565/1‑68 (MQ=255) cgtcgtCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGa < 1:1205921/68‑1 (MQ=255) cgtcgtCAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGa < 1:1214603/68‑1 (MQ=255) tcATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTgg < 1:1591185/68‑1 (MQ=255) tcAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTgg < 1:2062954/68‑1 (MQ=255) aCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACggct > 1:1624966/1‑68 (MQ=255) | TTACACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGGCACGGCT > NC_000913/2280639‑2280771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |