| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 61,712 | Δ11 bp | coding (1543‑1553/2907 nt) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 61711 | 1 (0.030) | 20 (0.540) | 14/120 | 0.6 | 95.4% | coding (1554/2907 nt) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor |
| ? | NC_000913 | 61723 = | 1 (0.030) | coding (1542/2907 nt) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor | |||||
TAATCGACATACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/61644‑61711‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGGTAGCCCATCA > NC_000913/61723‑61784 TAATCGACATACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCC > 1:2856232/1‑65 TACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGC < 1:815230/65‑1 TACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGC < 1:266847/65‑1 ACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGgt > 1:2848030/1‑63 CCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCgg > 1:2735458/1‑63 CCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGCGGCAGggt > 1:1458366/1‑62 TTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGGTTTt > 1:1572667/1‑64 ACCGCAGCGCGAATCCCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCA < 1:2975272/65‑1 GCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCGTTGGGGGAGAAGACCA > 1:1256648/1‑65 GCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGCGGCAGCGTTGGCGCAGATCACCA > 1:1919619/1‑65 GCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACT < 1:1126437/65‑1 ACCTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGGTTTGGCGGAGATCAACAGCACTTTTTGA > 1:555442/1‑65 CTTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGA < 1:1720911/65‑1 TTCACGTTCGCGCAGTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAG < 1:792973/65‑1 GCAGTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGT < 1:1987102/65‑1 GTACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAG < 1:560891/65‑1 TACCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGG < 1:2662374/65‑1 tCCTGCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGGT < 1:2073919/64‑1 GCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGGTAGCC < 1:104813/65‑1 GCTCCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGGCAGGTAGCC < 1:248460/65‑1 CCAGTGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGGTAGCCCAT < 1:2827354/65‑1 AGTGGCAGCTTTGGCGCAGATCCCCAGCACTTTCTGAGAGCGATGGCTGGTCAGGTAGCCCATCA < 1:937221/65‑1 TAATCGACATACCTTCGTGGAACACCGCAGCGCGAATACCTTCACGTTCGCGCAGTACCTGCTCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/61644‑61711‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtGGCAGCTTTGGCGCAGATCACCAGCACTTTCTGAGAGCGATGGCTGGTCAGGTAGCCCATCA > NC_000913/61723‑61784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |