| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,039,253 | C→A | L100I (CTT→ATT) | yedX → | hydroxyisourate hydrolase/transthyretin‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,039,253 | 0 | C | A | 98.6% | 270.8 / ‑3.3 | 72 | L100I (CTT→ATT) | yedX | hydroxyisourate hydrolase/transthyretin‑related protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (48/23); total (49/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.02e-01 | |||||||||||
TGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCAT > NC_000913/2039192‑2039312 | tGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTg > 1:3217271/1‑65 (MQ=255)tGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTg > 1:608321/1‑65 (MQ=255)tGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACCATTTCAAGAAACAAAATATTg > 1:418942/1‑65 (MQ=255) gCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGa < 1:505793/65‑1 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg > 1:1022725/1‑65 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg < 1:2156535/65‑1 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg < 1:220224/65‑1 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg > 1:231137/1‑65 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg < 1:613955/65‑1 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg > 1:2949772/1‑65 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg > 1:838298/1‑65 (MQ=255) aCTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAg > 1:295059/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:2140450/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:1453732/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:2659770/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt < 1:1966180/65‑1 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:1060500/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:1636314/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:3150251/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:1711807/1‑65 (MQ=255) tACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGtt > 1:1170354/1‑65 (MQ=255) gggCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTttct < 1:1227235/65‑1 (MQ=255) cGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTcc > 1:2369048/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCTTgag > 1:1626707/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:3129668/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:2535556/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:2915837/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:2008644/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:2603538/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:1058347/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:1210688/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:2089345/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:1841682/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:1037537/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgag > 1:1614704/1‑65 (MQ=255) aCCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATCGAAAGTTTCTTCCCTgag > 1:74542/1‑65 (MQ=255) ccGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTgaga < 1:1264645/65‑1 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:210326/1‑65 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:1169210/1‑65 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:3123208/1‑65 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:2564885/1‑65 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:2105572/1‑65 (MQ=255) cGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGAt > 1:2093795/1‑65 (MQ=255) tgtCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATcc > 1:1664010/1‑65 (MQ=255) gtCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATcct > 1:2142662/1‑64 (MQ=255) cGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCg > 1:217716/1‑65 (MQ=255) cGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCg > 1:2372234/1‑65 (MQ=255) gTATTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGt < 1:2834818/65‑1 (MQ=255) aTTTAAAACCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTg > 1:1653056/1‑65 (MQ=255) aaaCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAttt > 1:2380438/1‑65 (MQ=255) aaaCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAttt > 1:2689534/1‑65 (MQ=255) aCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGCTCCCCGTTGTATCTCa > 1:2900059/1‑65 (MQ=255) aCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa > 1:850188/1‑65 (MQ=255) aCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa > 1:3154693/1‑65 (MQ=255) aCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa > 1:320703/1‑65 (MQ=255) aCCGGGGACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa > 1:484199/1‑65 (MQ=255) gggACTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATAtt < 1:1397435/65‑1 (MQ=255) aCTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaat > 1:2581882/1‑65 (MQ=255) aCTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaat > 1:2330022/1‑65 (MQ=255) aCTATTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaat > 1:551968/1‑65 (MQ=255) aTTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATaaa > 1:2826510/1‑65 (MQ=255) aTTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATaaa > 1:2788038/1‑65 (MQ=255) aTTTCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATaaa < 1:151049/65‑1 (MQ=255) ttCAAGGAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGt < 1:3216609/65‑1 (MQ=255) ttCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGt < 1:2926982/65‑1 (MQ=255) tCAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTg > 1:983229/1‑65 (MQ=255) cAAGAAACAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGa < 1:122667/65‑1 (MQ=255) aaaCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGa < 1:2980618/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:483822/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:1828231/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:340228/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:142423/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:744186/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:808931/65‑1 (MQ=255) aCAAAATATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc < 1:2880775/65‑1 (MQ=255) aaaaTATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCAt < 1:1901705/65‑1 (MQ=255) aaaaTATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCAt < 1:1021274/65‑1 (MQ=255) aaaaTATTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCAt < 1:2509325/65‑1 (MQ=255) | TGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCAT > NC_000913/2039192‑2039312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |