| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,131,341 | Δ2,977 bp | IS5‑mediated | [yghQ]–[yghT] | [yghQ], yghR, yghS, [yghT] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3130202–3131346 | 3134317 | 2972–4116 | 10 [0] | [0] 53 | [yghO]–[yghT] | [yghO],[insH‑9],yghQ,yghR,yghS,[yghT] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3131340 | NA (NA) | 52 (0.960) | 28/126 | 0.2 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3134318 = | 0 (0.000) | coding (188/693 nt) | yghT | putative ATP‑binding protein YghT | |||||
CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3131276‑3131340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCT > NC_000913/3134318‑3134381 aAAACATGAAGAAATGAAATGGCTGAGCCGGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3357515/64‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCTCCTTCC < 1:2611363/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:4037839/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3114855/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:314203/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3178584/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:2320867/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:2318595/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:318056/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3224333/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3351846/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3458939/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3836385/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:3858420/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:1916544/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:1014816/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:1721547/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:4174258/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:1184842/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:415141/65‑1CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:4309038/65‑1 ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATA < 1:4202073/65‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAA > 1:1605507/1‑65 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAA > 1:578711/1‑65 ATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAA < 1:1608417/65‑1 ATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTNATTCGCACCTTCCATAAA < 1:3240565/65‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAA > 1:140347/1‑65 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAA > 1:4252787/1‑65 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAA > 1:718375/1‑65 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAA > 1:783514/1‑65 GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAAT < 1:2205904/65‑1 TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAA < 1:1080208/65‑1 TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAA < 1:1937677/65‑1 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGA < 1:4020134/65‑1 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGA > 1:1550010/1‑65 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAc > 1:665641/1‑64 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAA < 1:2357745/65‑1 TGACTGAGCCAGCCGAGAAGAATTCCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAA < 1:572744/65‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAAT > 1:1635315/1‑65 ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATC > 1:226330/1‑65 ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATC > 1:4422288/1‑65 TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAG > 1:15945/1‑65 gaaTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGG < 1:2258447/62‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGG < 1:3458577/65‑1 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGA < 1:2202587/65‑1 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGA > 1:2824298/1‑65 CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAAC > 1:2133931/1‑65 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACA > 1:715805/1‑65 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACA > 1:844260/1‑65 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACA > 1:2933279/1‑65 AGAATTTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAA > 1:4164472/1‑65 TTCCCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAAT > 1:4042913/1‑65 CCCGCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGC > 1:803194/1‑65 GCTTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTG > 1:1536114/1‑65 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:1921387/65‑1 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:1163463/65‑1 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:1124653/65‑1 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:4190397/65‑1 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:2172927/65‑1 TTATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGA < 1:2776422/65‑1 TATTCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGAC < 1:4340687/65‑1 TCGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAG > 1:3928180/1‑65 CGCACCTTCCATAAAATAATTGAACGAAATCAGGTGAGAACAGCAAAAAAATTGCCTGGACCAGT < 1:990293/65‑1 CGCACCTTCCATAAAACAATTGATCGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGT < 1:3423882/65‑1 CGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGT < 1:1373990/65‑1 CGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGT < 1:3272548/65‑1 CGCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGT < 1:2463848/65‑1 GCACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTT < 1:3518827/65‑1 atCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCC > 1:9578/3‑65 ACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCC > 1:1835116/1‑65 ACCTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCC > 1:3800958/1‑65 CTTCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGG > 1:3457874/1‑65 TCCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCG > 1:210788/1‑65 CATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCT < 1:221050/65‑1 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3131276‑3131340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCT > NC_000913/3134318‑3134381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |