| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,185,993 | Δ18 bp | coding (644‑661/4224 nt) | rpoC → | RNA polymerase subunit beta' |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4185993 | 4186010 | 18 | 55 [0] | [0] 55 | rpoC | RNA polymerase subunit beta' |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4185992 | 0 (0.000) | 48 (1.030) | 29/108 | 0.1 | 100% | coding (643/4224 nt) | rpoC | RNA polymerase subunit beta' |
| ? | NC_000913 | 4186011 = | 0 (0.000) | coding (662/4224 nt) | rpoC | RNA polymerase subunit beta' | |||||
AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4185920‑4185992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaagcgtaTCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT > NC_000913/4186011‑4186071 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGCNCTGAACGAAACCAACTCCGAAAC > 1:3409739/1‑65AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAAC > 1:938286/1‑65AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAAC > 1:1149418/1‑65AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAAC > 1:2098218/1‑65 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:4286132/1‑65 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA < 1:3864165/65‑1 GGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGC < 1:1881596/65‑1 GATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCG > 1:93623/1‑65 TCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA > 1:3980278/1‑65 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAA > 1:1056226/1‑65 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAA > 1:804481/1‑65 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAA < 1:3615809/65‑1 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAA > 1:2160450/1‑65 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAA > 1:1594600/1‑65 GCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAAC > 1:4387086/1‑65 GAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCT > 1:3304986/1‑65 GAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCT < 1:3790102/65‑1 GAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGC > 1:650150/1‑65 AACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCG > 1:2808202/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATGCAACTGCTGGAAGCGT > 1:16970/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGT > 1:2557872/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGT > 1:2610044/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGT > 1:4146154/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGT > 1:3152905/1‑65 ACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGT > 1:3645424/1‑65 CAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTT > 1:3665387/1‑65 AGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTC > 1:2811387/1‑65 GCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCG > 1:1829974/1‑65 TGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTT > 1:2410930/1‑65 CGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCA < 1:1757016/65‑1 TGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGT < 1:569213/65‑1 TGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGT < 1:3568461/65‑1 GAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTC < 1:3373480/65‑1 GCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA > 1:4042340/1‑65 GCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:1054122/65‑1 GCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:3197876/65‑1 GCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA > 1:3018670/1‑65 ACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAA < 1:3268344/65‑1 ACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAA < 1:1368939/65‑1 GAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACC < 1:3631271/65‑1 GAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACC > 1:3074794/1‑65 ACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA < 1:3180464/65‑1 ACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA < 1:151284/65‑1 ACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA > 1:2215345/1‑65 ACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGA > 1:2659859/1‑65 CAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGT < 1:316789/65‑1 AACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTG < 1:1840951/65‑1 ACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGG < 1:1640044/65‑1 ACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGG < 1:766890/65‑1 ACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGG > 1:3217774/1‑65 TCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGAT > 1:2329329/1‑65 CGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGA < 1:937030/65‑1 GAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:2809796/65‑1 GAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:4126241/65‑1 GAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:4272395/65‑1 GAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:2478274/65‑1 GAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:2200037/65‑1 AAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGAC < 1:3833508/65‑1 AGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACC < 1:750224/65‑1 AGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACC < 1:3338874/65‑1 GCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCG < 1:3933485/65‑1 GCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCG < 1:3060599/65‑1 CGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT > 1:4105074/1‑65 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4185920‑4185992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaagcgtaTCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT > NC_000913/4186011‑4186071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |