| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 0 (0.000) | 53 (1.280) | 23/96 | 0.1 | 99.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 1 (0.020) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
Only 100 of 132 total aligned reads displayed.
AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAT > NC_000913/1207726‑1207853 | aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:2391016‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3712241‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3395252‑M1/1‑65 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:3396130‑M1/1‑65 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg > 1:2089519‑M1/63‑65 (MQ=255) cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG > 1:1395211‑M1/1‑65 (MQ=255) tccccctggtaaaagcagnaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:3246377‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:1737937‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:2340221‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:4138933‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:4044048‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:1786677‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:549669‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:350344‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:755676‑M1/5‑1 (MQ=255) cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:1453371‑M1/57‑65 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG < 1:885600‑M1/65‑1 (MQ=255) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:519726‑M1/1‑65 (MQ=255) ttcgcgaTATCAAATCGGATCGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:1942018‑M1/62‑2 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:1390788‑M1/65‑2 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc > 1:1878657‑M1/1‑64 (MQ=255) gtgGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:3096409‑M1/64‑2 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGCGAAGGAGc < 1:1658041‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:2453753‑M1/47‑65 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:1574605‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:268188‑M1/47‑65 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:2265254‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:1906091‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:2303047‑M1/19‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:1993470‑M1/65‑5 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:4137338‑M1/65‑5 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:1739511‑M1/65‑5 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:4271677‑M1/65‑6 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa > 1:132235‑M1/44‑65 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa > 1:3068570‑M1/44‑65 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:4168306‑M1/65‑7 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:3811001‑M1/65‑7 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:2838067‑M1/65‑7 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:3818178‑M1/42‑65 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:3680491‑M1/24‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:3646112‑M1/42‑65 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:579728‑M1/24‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:122222‑M1/24‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:633178‑M1/42‑65 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:118121‑M1/24‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:1331020‑M1/24‑1 (MQ=255) tgatgccatttgcttgttatttcttcattttcatagacgTTGGTTTGGGAGAAGGAGCAAAACTc < 1:3338708‑M1/26‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta > 1:2933922‑M1/1‑55 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:4139125‑M1/39‑65 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:1408275‑M1/39‑65 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:1630288‑M1/27‑1 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:2031740‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:4198085‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:1483608‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGctctgcattac < 1:4310542‑M1/65‑12 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg > 1:1163777‑M1/1‑51 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2722182‑M1/65‑17 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:2127286‑M1/33‑65 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:2648538‑M1/32‑65 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:2151819‑M1/65‑20 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:3199832‑M1/27‑65 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:264376‑M1/27‑65 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:1293111‑M1/40‑1 (MQ=255) aCTGTGCAAACGTCTCTCGAAACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc > 1:2675805‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc > 1:1879259‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc > 1:4265645‑M1/1‑41 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:4201210‑M1/25‑65 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:2953066‑M1/24‑65 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:3733162‑M1/23‑65 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:1152895‑M1/23‑65 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt < 1:2869355‑M1/65‑28 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:978648‑M1/22‑65 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:667471‑M1/22‑65 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:4076005‑M1/22‑65 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:44914‑M1/22‑65 (MQ=255) gCAAGCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:1315833‑M1/65‑30 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc > 1:3265660‑M1/1‑36 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc > 1:1255036‑M1/1‑36 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:1885874‑M1/65‑30 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:4251963‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:1049904‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:2182982‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:245331‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:2568056‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtga > 1:3082969‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGActctgcattacctgttggtgtcccggttccgtgg > 1:2641024‑M1/1‑31 (MQ=255) ggCTCTCGAAAACCTTGTTTTGGGAGAAGGctctgcattacctgttggtggcccggttccgtggc < 1:3503448‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttncgtggc < 1:2588452‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:3501839‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:245720‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:892207‑M1/65‑36 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc < 1:474590‑M1/65‑37 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:1735755‑M1/13‑65 (MQ=255) tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTATGACGCa > 1:2013678‑M1/12‑65 (MQ=255) tcGAAACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:2525073‑M1/65‑41 (MQ=255) aacccttgGTTTGGGAGAAGGctctgcattgcctgttggtgtcccggttccgtggccttcagcca < 1:1653416‑M1/62‑45 (MQ=255) aaacgTTGGTTTGGGAGAGGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt > 1:3968586‑M1/6‑65 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:3961304‑M1/1‑19 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:226274‑M1/1‑19 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc < 1:1972256‑M1/65‑49 (MQ=255) | AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAT > NC_000913/1207726‑1207853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |