| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 42 (0.760) | 10 (0.210) | 7/110 | 1.9 | 18.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 53 (1.120) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA > NC_000913/4542626‑4542752 | agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA > 1:2066455‑M1/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:651865/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:3598676/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2022620/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1976878/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:1765737/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:609895‑M1/65‑2 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:3461997/1‑65 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:190849/1‑65 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATAGGGGCCAAAc < 1:4276524/65‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAAAAAATACAAGACAATTGGGGCCAAAc < 1:82632/65‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:2256732/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:1594416/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:1730254/1‑65 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:2634357/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:1365577/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:3737646/65‑1 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:806915‑M1/51‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:1762820‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:738927‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:485840‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:2771383/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:3487280/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:2081061/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:1576406/1‑65 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAGCAAATAAGTACAAGACAATTGGGGCCAAACTGTCCatat < 1:4218365/65‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag > 1:598295‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:903781/65‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGCACAAACTGTCCATATc > 1:70140/1‑65 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:928751/1‑65 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 1:4093712/65‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAACTCGCGCCACACTGCCCATATCataaa > 1:2725938/1‑65 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata > 1:3046867/1‑65 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa > 1:3964235‑M1/36‑65 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:3015839‑M1/1‑42 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:1225875/65‑1 (MQ=255) ctgcacagttttaccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:2687233‑M1/34‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:1889924/65‑1 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt > 1:97170/1‑65 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:3677577/65‑1 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:481972/65‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:2206769‑M1/28‑65 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:726194‑M1/43‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:1884989/65‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:3169116/1‑65 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa < 1:3017368/65‑1 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat > 1:725162‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:1338566/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:1449187/65‑1 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATCTTTTCTCAAGCATaaa > 1:2243365/1‑65 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa < 1:273176/65‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt > 1:3306156‑M1/1‑13 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1212046/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1938563/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat < 1:4209879/65‑1 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:2468757/1‑65 (MQ=255) ttgggggccattttgactcatagaggaaagcatcgcgggcaaactttttcagtttatttgttggc < 1:4215688‑M1/62‑56 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:3162879‑M1/65‑56 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2797648‑M1/65‑56 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt > 1:61819‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt < 1:747715‑M1/65‑58 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:3459220‑M1/65‑1 (MQ=255) ggggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta > 1:700462‑M1/1‑7 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:4242026‑M1/65‑61 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1639028‑M1/65‑61 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1221630‑M1/65‑61 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:1115975‑M1/65‑61 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:662542‑M1/65‑61 (MQ=255) ggCCAttttgacacatagaggaaagcatcgcggacaaactttttcagttgatttgttggcttaat < 1:122481‑M1/65‑61 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:1149638‑M1/1‑3 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:2069234‑M1/65‑63 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:2424467‑M1/65‑63 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:2740541‑M1/1‑3 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:3906431‑M1/65‑63 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:3865714‑M1/65‑63 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:3047849‑M1/65‑63 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:3288880‑M1/65‑63 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:2160150‑M1/65‑1 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:492006‑M1/65‑1 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:2781512‑M1/65‑1 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:2827041‑M1/65‑1 (MQ=255) | AGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA > NC_000913/4542626‑4542752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |