| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 0 (0.000) | 58 (1.400) | 23/96 | 0.1 | 99.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 1 (0.020) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
CAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209539‑1209666 | cggccaggctgTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:1485622‑M2/3‑64 (MQ=255)cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:2829444‑M2/1‑64 (MQ=255)cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:3939969‑M2/1‑64 (MQ=255)cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:103636‑M2/1‑64 (MQ=255)cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:47092‑M2/1‑64 (MQ=255)cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:2955713‑M2/1‑64 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGCAATGCagagac > 1:4169821/1‑63 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCAAGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:659523‑M2/65‑4 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt < 1:3669205‑M2/65‑5 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:1710393‑M2/1‑58 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:365229‑M2/1‑58 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc < 1:2178950‑M2/65‑9 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc < 1:1594335‑M2/65‑15 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTTATGCAGAGccttctcccaaacca < 1:3423275‑M2/65‑16 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag < 1:1972256‑M2/65‑18 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt > 1:226274‑M2/1‑46 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt > 1:3961304‑M2/1‑46 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt > 1:882579‑M2/1‑46 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt > 1:3278828‑M2/1‑46 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGCAATGCAGAGccttctcccaaaccaagggtt < 1:1653416‑M2/65‑22 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcga < 1:2525073‑M2/65‑26 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:474590‑M2/65‑30 (MQ=255) gCCACGNAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:2588452‑M2/65‑31 (MQ=255) gCCACGGAACCGGGCCACCAACAGGTAATGCAGAGccttctcccaaaacaaggttttcgagagcc < 1:3503448‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:245720‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:3501839‑M2/65‑31 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:892207‑M2/65‑31 (MQ=255) tcaCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:3082969‑M2/2‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGtcttctcccaaaccaaggttttcgagagccg > 1:2641024‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:2568056‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:1049904‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:245331‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:2182982‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:14526‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:4251963‑M2/1‑34 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:3265660‑M2/1‑29 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc < 1:1885874‑M2/65‑37 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:1255036‑M2/1‑29 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgcttgc < 1:1315833‑M2/65‑37 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac < 1:2869355‑M2/65‑39 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:4265645‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1376847‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1879259‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:1880513‑M2/1‑24 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagacgtttgcacagt > 1:2675805‑M2/1‑24 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 1:4127271‑M2/65‑44 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat < 1:2151819‑M2/65‑47 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg < 1:2722182‑M2/65‑50 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagcgccatccg < 1:3149512‑M2/65‑50 (MQ=255) cagggtaaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 1:1206782‑M2/4‑15 (MQ=255) cAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgat > 1:1163777‑M2/1‑14 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:2507085‑M2/65‑53 (MQ=255) gTAATGCAGAGccttctcccaacccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:4310542‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:2031740‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:1979994‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:1682316‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:1483608‑M2/65‑55 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:4198085‑M2/65‑55 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:2933922‑M2/1‑10 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:2838067‑M2/65‑60 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc < 1:3811001‑M2/65‑60 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagcagtttgcacagtgccatccgatttgatatc < 1:4168306‑M2/65‑60 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:1782067‑M2/65‑61 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:4271677‑M2/65‑61 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:90927/1‑65 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:4137338‑M2/65‑62 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:1993470‑M2/65‑62 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:1739511‑M2/65‑62 (MQ=255) agcctcntcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcca < 1:2590920‑M2/65‑64 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgcgatccgatttgatatcgcgaa < 1:1942018‑M2/65‑65 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccac < 1:3096409‑M2/65‑65 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa > 1:1878657‑M2/1‑1 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 1:1390788‑M2/65‑65 (MQ=255) | CAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT > NC_000913/1209539‑1209666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |