| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,619,370 | T→G | V84G (GTG→GGG) | marR → | DNA‑binding transcriptional repressor MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,619,370 | 0 | T | G | 97.1% | 112.5 / ‑3.4 | 34 | V84G (GTG→GGG) | marR | DNA‑binding transcriptional repressor MarR |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (28/5); total (29/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
TCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGC > NC_000913/1619312‑1619431 | tcggtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGagag > 1:164293/1‑65 (MQ=255)tcggtcgACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAg > 1:1753680/1‑65 (MQ=255)tcggtcgACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGGGGAAAg > 1:3685391/1‑65 (MQ=255) ggAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGCAccc > 1:238339/1‑65 (MQ=255) aGCACTGACCCGTATGCTGGATCGTGTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGa > 1:3083084/1‑65 (MQ=255) aGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGGAAGGATGCCGAACCCGa > 1:822998/1‑65 (MQ=255) aGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGa > 1:99927/1‑65 (MQ=255) gCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGaa < 1:220903/65‑1 (MQ=255) gCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGaa > 1:2029260/1‑65 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTTTGTAAAGGCTGGGGGGAAAGGCTGTCCGACCCGatcg > 1:1754786/1‑62 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATg > 1:3002868/1‑65 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATg > 1:3451554/1‑65 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGGCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATg > 1:1786478/1‑65 (MQ=255) aCTGACCCGTATGCTGGATCGCCCGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATg > 1:3848394/1‑65 (MQ=255) cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAg > 1:1625218/1‑65 (MQ=255) cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACACGAATGACAAg > 1:2923323/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCTGAACCCGAATGACAAGCgcggcg > 1:1157286/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:2351610/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:1284994/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:1339181/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:4296587/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:3284197/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:3102230/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcggcg > 1:2631668/1‑65 (MQ=255) gCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCgcgccg > 1:137820/1‑65 (MQ=255) gCTGGATCGCCTGGCCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCCAATGACAAGCgcggcc > 1:4343673/1‑64 (MQ=255) aTCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTg > 1:4197889/1‑65 (MQ=255) aTCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTg > 1:832644/1‑65 (MQ=255) aTCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTg > 1:2916045/1‑65 (MQ=255) tCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTgg < 1:61858/65‑1 (MQ=255) gCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTa > 1:4268810/1‑65 (MQ=255) ggTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAAc < 1:928750/65‑1 (MQ=255) ggTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAAc < 1:2659655/65‑1 (MQ=255) tCTGTANAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACtt > 1:2578299/1‑65 (MQ=255) tCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACtt > 1:3025165/1‑65 (MQ=255) tCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACtt > 1:2512003/1‑65 (MQ=255) tCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACtt > 1:3385565/1‑65 (MQ=255) tCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACtt > 1:3358670/1‑65 (MQ=255) tGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac < 1:3672737/65‑1 (MQ=255) ggCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcgg > 1:774754/1‑65 (MQ=255) ggCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcgg > 1:1642964/1‑65 (MQ=255) cTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggcg > 1:2660014/1‑65 (MQ=255) cTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggcg > 1:3012353/1‑65 (MQ=255) cTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCAAcggcg > 1:1812793/1‑65 (MQ=255) ggggggAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc < 1:778585/65‑1 (MQ=255) | TCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGC > NC_000913/1619312‑1619431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |