| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.120) | 38 (0.850) | 21/96 | 0.2 | 79.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 14 (0.310) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
Only 100 of 131 total aligned reads displayed.
AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAT > NC_000913/1207726‑1207853 | aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACCT > 1:2472401‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3255968‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:201025‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3912454‑M1/1‑65 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCAACGGCCAAACGGCTCTCGCACACCT > 1:3183974‑M1/1‑65 (MQ=255)aGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:2776509‑M1/1‑65 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:4157542‑M1/1‑65 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg < 1:3447985‑M1/3‑1 (MQ=255) cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG > 1:2540459‑M1/1‑65 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:41050‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:3824883‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:4577509‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:1766883‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:3517342‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:4030900‑M1/5‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTCGGt < 1:169375‑M1/5‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:1582362‑M1/6‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:789506‑M1/6‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:4720088‑M1/6‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:1367317‑M1/6‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttattccttcattttcataaacgTTGGtt < 1:2735843‑M1/6‑1 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG < 1:4318815‑M1/65‑1 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:2162844‑M1/65‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAaga > 1:3120384‑M1/50‑64 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGt < 1:3605914‑M1/65‑2 (MQ=255) aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 1:4404449‑M1/49‑65 (MQ=255) aagcaggaatgatgccatttgcttgttatttctgcattttcataaacgTTGGTTTGGGAGAAGGa > 1:823346‑M1/49‑65 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:4153130‑M1/18‑1 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 1:3688120/65‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:3511110‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:4597249‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 1:865567‑M1/47‑65 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:3149623‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:4730221‑M1/19‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGATTGGGAGAAGGAGc > 1:3665880‑M1/47‑65 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa > 1:1244074/1‑65 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:641342‑M1/65‑6 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:1136586‑M1/65‑6 (MQ=255) cGATATCAAATCGGATGGCACTGTACAAACGGCTCTCGAAGACCTTGGTTTGGGAGAAGGctctg < 1:3973701‑M1/65‑6 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa > 1:21060‑M1/44‑65 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:2093321‑M1/65‑7 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:259904‑M1/65‑7 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca < 1:3799520‑M1/65‑8 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:2712635‑M1/24‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:2612621‑M1/42‑65 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:4516008‑M1/42‑65 (MQ=255) cAAATCGGATGGCACTGTGCGAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:2198425‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGctctgcattac < 1:4515596‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:3925085‑M1/65‑12 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:4333984‑M1/65‑12 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:1812582‑M1/37‑65 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:1193397‑M1/29‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:542288‑M1/34‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:15400‑M1/65‑23 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:1170645‑M1/65‑23 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg > 1:1239515‑M1/28‑65 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 1:758701‑M1/38‑1 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:1498930‑M1/27‑65 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:1406778‑M1/27‑65 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:1342368‑M1/27‑65 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:159416‑M1/27‑65 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:1882351‑M1/27‑65 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc > 1:195448‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc < 1:537391‑M1/65‑25 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtcggtgtccc > 1:4615526‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc > 1:1748613/1‑65 (MQ=255) gttatttcttcatcttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:1328108‑M1/25‑65 (MQ=255) tggcaAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt < 1:372481‑M1/63‑28 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc > 1:1148632‑M1/1‑36 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:1091680/1‑65 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:3817347‑M1/47‑1 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAAATTa < 1:1421183‑M1/47‑1 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg > 1:4015946‑M1/17‑65 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3342740‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:506506‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:569036‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:677258‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:75000‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3729451‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:1646628‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:1661672‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:2244083‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3392315‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:4480276‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3615734‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3489750‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgc > 1:2477006‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctcggcattacctgttggtgtcccggttccgtgg > 1:164436‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACATTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:3679537‑M1/1‑31 (MQ=255) ggCTCTCGAAATCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:879415‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:2159262‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:205717‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:2184361‑M1/65‑36 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:2873976‑M1/65‑36 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc < 1:683373‑M1/65‑37 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc < 1:2020365‑M1/65‑37 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:2426618‑M1/13‑65 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc > 1:1430512‑M1/1‑26 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:468692‑M1/7‑65 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt > 1:3501273/1‑65 (MQ=255) | AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAT > NC_000913/1207726‑1207853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |