| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,087,406 | 0 | A | C | 50.0% | 0.7 / 17.8 | 16 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| Reads supporting (aligned to +/- strand): ref base A (8/0); new base C (0/8); total (8/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTCCGTCATCAGATTTTGCATAAA‑CACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAAGAGAG > NC_000913/2087342‑2087468 | tttCCGTCATCAGATTTTGCATAAA‑CACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGcca > 1:2869132/1‑65 (MQ=255) ttCCGTCATCAGATTTTGCATAAA‑CACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGccac > 1:1742209/1‑65 (MQ=255) acaTTTTGCATAAC‑CCCCGGCGCCCGCATTTTTTGCAAAAATTT‑CTTCCCCCCCCCAGCCACTgg < 1:2453655/63‑1 (MQ=255) atatttGCAAAAACCACCGGCGATCCCCCTATTTGAAAAAATTC‑CACCCCGCCCCCAGCCACTgg < 1:4426894/62‑1 (MQ=255) ttGCATAAC‑CCCCGGCGATCCCATTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:4484916/65‑1 (MQ=255) ttGCAAAAC‑CCCCGGCGATCGCATTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:1070597/65‑1 (MQ=255) tGCAAAAA‑CCCCGGCCATCCCCTTTTTTTCTAAAATTTCCCCCCCGCCCCCAGCCACTGGCAAGt < 1:3370723/65‑1 (MQ=255) gCATAAA‑CCCCGGCGATGGCGTTTTTTGCTAAAATTC‑CCTCCCGCCCCCAGCCACTGGCAAGTcc < 1:640468/65‑1 (MQ=255) gCAAAAA‑CACCGGCGATCGCATTTTTTGCAAAATTTT‑CACCCCCCCCCCAGCCACTGGCAAGTcc < 1:4034654/65‑1 (MQ=255) ccATAAA‑CACCGGCGATCGCATTTTTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTcc < 1:662191/64‑1 (MQ=255) aa‑CCCCGGCGATCGCCCTATTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGTAAGTCCTGCgg < 1:2463794/65‑1 (MQ=255) cgggCGATCGCCTTTTTTGCTAAATTTT‑CACCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTg < 1:4395477/63‑1 (MQ=255) cGGCGATCGCCTTTTTTGCTAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:3971563/65‑1 (MQ=255) cGGCGATCGCACTATTTGCTAAAATTT‑CTCCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:390225/65‑1 (MQ=255) gCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTgttc > 1:2197555/1‑65 (MQ=255) gaccGCACTTTTGTCTAAATTTT‑CATCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:1845329/62‑1 (MQ=255) gATCCCACTATTTGCAAAATTTT‑CCCCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:4388237/65‑1 (MQ=255) tCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTgttcgttc > 1:587963/1‑65 (MQ=255) gCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCa > 1:1948216/1‑65 (MQ=255) aCTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGc > 1:252984/1‑65 (MQ=255) tATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCa > 1:1319103/1‑65 (MQ=255) tttGCAAAATTTT‑CCCCCCCCCCCCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAAt < 1:4568966/65‑1 (MQ=255) ttGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATc > 1:4361370/1‑65 (MQ=255) cTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAg > 1:326562/1‑65 (MQ=255) aTTC‑CACCCCCCCCCCAGCCACGGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACggg < 1:362050/65‑1 (MQ=255) tt‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGtt > 1:2358/1‑65 (MQ=255) ccccGCCCCCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCaaa < 1:806500/64‑1 (MQ=255) ccaccaGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAagagag > 1:38739/1‑65 (MQ=255) | TTTCCGTCATCAGATTTTGCATAAA‑CACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAAGAGAG > NC_000913/2087342‑2087468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |