| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 296,504 | T→G | N198T (AAC→ACC) | intF ← | CP4‑6 prophage; putative phage integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 296,504 | 0 | T | G | 85.7% | 10.9 / ‑2.4 | 7 | N198T (AAC→ACC) | intF | CP4‑6 prophage; putative phage integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (6/0); total (6/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.80e-01 | |||||||||||
TTGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTCC > NC_000913/296443‑296568 | ttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGa < 1:1763952/65‑1 (MQ=255) cTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCaa > 1:3145256/1‑65 (MQ=255) aCTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCGAAAAAGccc > 1:258161/1‑64 (MQ=255) aCTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGGCAAATAGccc > 1:3964243/1‑64 (MQ=255) aCTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGGGGGGAAACTAGCCa > 1:351086/1‑65 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTGGGGCAAACTAGCCaaa > 1:689256/1‑64 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGGAAATAGCCAAt > 1:2658794/1‑65 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAATACCCAAt > 1:976972/1‑65 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGAGCGCCAACTCGCCAAt > 1:4196246/1‑65 (MQ=255) gCCACGCTGCTCTGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTTAACAAACTAGCCAAtcgg > 1:112018/1‑62 (MQ=255) ctATGTAAGCGGGGTTTAGCTCCGATAACGGGAGGTTGAGAAAATTAGCCAATGGTCCAGCCGaa < 1:2133525/65‑1 (MQ=255) aTGTAATCTGGGGTTCGCTCCGATACGGGCGGGTTGAGCAAACTAGCCAATGGTCCAGCCGAAGt < 1:635566/65‑1 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGGGCAAACCAGCCACTGGGCCACCCGCAGTCg > 1:3160801/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGGAAAATAGCCAAAGGGCCAGCCGCAGGCg > 1:4550305/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAACTAGCCCATGGGCCCGCCGCAGACg > 1:3314564/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAACTAGCCCATGGTCCAGCCGGAGGCggg > 1:2806973/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAACTAGCCAAAGGGCCAGCCGGAGGCggg > 1:583989/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAATACCCCACGGTCAGGTGGAAGTCggg > 1:3433212/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAATAAGCAAAGGGGCAGGCCAAGGCggg > 1:682974/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCAAACTAGCCAATGGGCCCGCCGGAGTCggg > 1:884939/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCAAACTAGCCAATGGGCCAGCCGAAGTCggg > 1:4358089/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCAAAACAGCCCACGGGGCCGCCCCAGTCggg > 1:1191314/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAACTAGCCAATGGGCCAGCCGCAGGCggg > 1:696947/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAACTAGCCAATGGGCCAGCCGAAGGCggg > 1:631568/1‑65 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGGGGGCAAACCAGCCCAAGGTGCCGCCGCAGGCggg > 1:2187182/1‑65 (MQ=255) ggggTTAGCTCCGATAACGGCAGGGTGAGGAAAATAGCGAAAGGGCCAGCCGAAAGCGGGGCTTg > 1:960479/1‑65 (MQ=255) gTTAGCTCCGATAACGGCAGGGTGAGCAAACTAGCCCATGGTCCAGCCGAAGTCGGGGCGTGGcc > 1:1640081/1‑65 (MQ=255) ttAGCTCCGATAACGGCAGGGTGGGGAAACTAGCCAAAGGGCCAGCCCGAGGGGGGCCTTTGccg > 1:23983/1‑64 (MQ=255) ttAGCTCCGATAACGGCAGGGTGGGGAAACCATCCCACGGTTCTGCCCAACTCGGGGCGTGGcgg > 1:619719/1‑63 (MQ=255) gCTCCGATAACGGCGGTTTGAGCAAATTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCtt < 1:1339100/65‑1 (MQ=255) gCTCCGATAACGGCAGGGTGAGGAAAATAACCCATGGGCCAGCCGGAGGCGGGGCCTTGcttctt > 1:475332/1‑65 (MQ=255) tCCGATAACGGCAGGGTGGGGAAAATAGCCAATGGGCCAGCCCCAGGCGGGGCCTGGGCTCtttt > 1:3453580/1‑65 (MQ=255) gattGAGCAATCTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCt < 1:3576739/63‑1 (MQ=255) ttGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTcc > 1:4410896/1‑65 (MQ=255) | TTGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTCC > NC_000913/296443‑296568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |