New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 291401	NA (NA)	6 (0.100)	5/128	2.4	8.6%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 481015	64 (1.100)					intergenic (‑307/+239)	tomB/acrB	protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB
Rejected: Frequency below/above cutoff threshold.

GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/291349‑291401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCGGTTATTACGTCATATTCAGAGCAATCCTGGTATTAGTG  <  NC_000913/481015‑480973                                                                                                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTCGGTTATTA                                 <  1:3724218/65‑1    CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTCGGTTATTACGT                              <  1:811658/65‑1             AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTCGGTTATTACGTCATATTCAG                     >  1:4381586/1‑65                           CTAAATCAGTAAGTTGGCAGCATCACCCCTCGGTTATTACGTCATATTCAGAGCAATCCTGGTAT       >  1:3092214/1‑65                                TCAGTAAGTTGGCAGCATCACCCCTCGGTTATTACGTCATATTCAGAGCAATCCTGGTATTAGTG  >  1:2340032/1‑65                                TCAGTAAGTTGGCAGCATCACCCCTCGGTTATTACGTCATATTCAGAGCAATCCTGGTATTAGTG  >  1:3627439/1‑65                                                                                                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/291349‑291401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCGGTTATTACGTCATATTCAGAGCAATCCTGGTATTAGTG  <  NC_000913/481015‑480973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.