| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 15 (0.260) | 38 (0.870) | 22/96 | 0.2 | 74.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 15 (0.340) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA > NC_000913/1209555‑1209683 | atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:63086‑M2/1‑1 (MQ=255) tgaacccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg < 1:3149421‑M2/2‑1 (MQ=255) gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:4317157‑M2/3‑1 (MQ=255) aaaccgggtgcgtcttaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:3812322‑M2/3‑1 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt > 1:2289157‑M2/61‑65 (MQ=255) aaccggtgcgtcctaatgtagcccttgctgcattgagttttgctccttctcccaaaccaaCGttt > 1:822092‑M2/61‑65 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa > 1:2700702‑M2/60‑65 (MQ=255) gcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa > 1:4552352‑M2/54‑65 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:3938653/1‑65 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:3496122/1‑65 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:4455770/1‑65 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:1243479/1‑65 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa > 1:932641‑M2/50‑65 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag > 1:1827523‑M2/49‑65 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga < 1:944128‑M2/18‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 1:3878255‑M2/25‑1 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATGACaa > 1:592010‑M2/40‑65 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa > 1:3728884‑M2/40‑65 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg > 1:1255207‑M2/39‑65 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc < 1:4543343‑M2/28‑1 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:3022170‑M2/33‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 1:406551‑M2/34‑1 (MQ=255) cAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:2528736/65‑1 (MQ=255) attgagttttgctctttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:3190204‑M2/30‑65 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:638176‑M2/30‑65 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:2456439‑M2/30‑65 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:3961823‑M2/30‑65 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:75627‑M2/30‑65 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:2029359/1‑65 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:1996604/1‑65 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc < 1:3136354‑M2/38‑1 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:4379717/1‑65 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:4429324/1‑65 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:349730/1‑65 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:1081690‑M2/41‑1 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:3695115‑M2/41‑1 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:3595832‑M2/41‑1 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:1053479‑M2/25‑65 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:1928940‑M2/25‑65 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:2612377‑M2/41‑1 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:4517093/65‑1 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:1891486/1‑65 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:2439621‑M2/23‑65 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:897255‑M2/23‑65 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:3186072‑M2/23‑65 (MQ=255) cAGAGCCTTCACCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTCCt > 1:4209862/1‑65 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg > 1:864755/1‑65 (MQ=255) gctccttctcccaaaccaaCGTTTATGAAAATGAGGAAATAACAAGCAAATGGCATCATTCCTGc < 1:2564752‑M2/46‑1 (MQ=255) gctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:3927966‑M2/46‑1 (MQ=255) gctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:116325‑M2/46‑1 (MQ=255) gctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:352538‑M2/46‑1 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:1596411‑M2/18‑65 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:1169357/1‑65 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:573428‑M2/17‑65 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 1:1181244‑M2/10‑65 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 1:4422079‑M2/10‑65 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:4265778‑M2/59‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:4358646‑M2/59‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:3127118‑M2/59‑1 (MQ=255) accagCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:441227‑M2/60‑1 (MQ=255) accaaCTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGgaga < 1:4124257‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:825399‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:1863085‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:1435742‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:1585559‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:500144‑M2/6‑65 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:1708021‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:1854589‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:2848345‑M2/6‑65 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:320656‑M2/60‑1 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt > 1:316602‑M2/5‑65 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:1579562‑M2/4‑65 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:59150‑M2/4‑65 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:3608305‑M2/4‑65 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 1:899843/1‑65 (MQ=255) | GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA > NC_000913/1209555‑1209683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |