BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB‑5–insA‑5	insB‑5, insA‑5

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979269	1979278	10–776	85 [0]	[0] 80	insB‑5–insA‑5	insB‑5,insA‑5

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	68 (1.450)	28/118	0.1	100%	intergenic (‑305/+16)	flhD/insB‑5	DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB
*	?	NC_000913	1979279 =	0 (0.000)	68 (1.450)	28/118	0.1	100%	intergenic (‑64/‑474)	insA‑5/uspC	IS1 protein InsA/universal stress protein C

GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG  >  NC_000913/1978435‑1978568

ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                    >  1:1184848‑M1/1‑68 (MQ=255)

ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                    >  1:1262701‑M1/1‑68 (MQ=255)

ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                    >  1:3362788‑M1/1‑68 (MQ=255)

ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                    >  1:1599937‑M1/1‑68 (MQ=255)

 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                   <  1:1760820‑M1/68‑2 (MQ=255)

 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                   <  1:2137920‑M1/68‑2 (MQ=255)

 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                   <  1:3641421‑M1/68‑2 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:933196‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:2444338‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:2931359‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:3564491‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:506981‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                  >  1:2017766‑M1/1‑66 (MQ=255)

  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGct                                                                  >  1:3225707‑M1/1‑66 (MQ=255)

    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                >  1:1786416‑M1/1‑64 (MQ=255)

     gCTGCGATTTTCCATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                               >  1:2554660‑M1/1‑63 (MQ=255)

     gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                               >  1:500266‑M1/1‑63 (MQ=255)

     gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                               >  1:138734‑M1/1‑63 (MQ=255)

      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                              <  1:1613140‑M1/68‑7 (MQ=255)

      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                              <  1:3395938‑M1/68‑7 (MQ=255)

       tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                             >  1:2345969‑M1/1‑61 (MQ=255)

             tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                       <  1:1405816‑M1/68‑14 (MQ=255)

                 aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                   <  1:1682138‑M1/68‑18 (MQ=255)

                    aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                >  1:1940464‑M1/1‑48 (MQ=255)

                        cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                            <  1:1654549‑M1/68‑25 (MQ=255)

                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                           <  1:956040‑M1/68‑26 (MQ=255)

                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                           <  1:1320655‑M1/68‑26 (MQ=255)

                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                           <  1:740164‑M1/68‑26 (MQ=255)

                           gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcntactttagttttgggtgt                                         <  1:3093819‑M1/68‑28 (MQ=255)

                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                       <  1:2215847‑M1/68‑30 (MQ=255)

                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                       <  1:941600‑M1/68‑30 (MQ=255)

                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                       <  1:3171131‑M1/68‑30 (MQ=255)

                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                       <  1:553504‑M1/68‑30 (MQ=255)

                              gCAGATCACACAAAACACTCAATTACTTATCATAAATGtataagtcatacttttgctttgggtgtatt                                      >  1:3591117‑M1/1‑38 (MQ=255)

                              gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                      >  1:2680484‑M1/1‑38 (MQ=255)

                              gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                      >  1:3762938‑M1/1‑38 (MQ=255)

                              gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                      >  1:1958089‑M1/1‑38 (MQ=255)

                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                    >  1:3337903‑M1/1‑36 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:1644574‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:1646669‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:1653909‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:1729542‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:3758831‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:3251915‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:2523531‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:1804633‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                 >  1:3693614‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtacttcaat                                 >  1:2814318‑M1/1‑33 (MQ=255)

                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagacatacttctgtcctggctgtatttcact                                 >  1:3578388‑M1/1‑33 (MQ=255)

                                     acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                               >  1:2932412‑M1/1‑31 (MQ=255)

                                     acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                               >  1:3721411‑M1/1‑31 (MQ=255)

                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                             >  1:3491295‑M1/1‑29 (MQ=255)

                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                             >  1:2739543‑M1/1‑29 (MQ=255)

                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                             >  1:322320‑M1/1‑29 (MQ=255)

                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                             <  1:1459957‑M1/68‑40 (MQ=255)

                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                             >  1:1751830‑M1/1‑29 (MQ=255)

                                        caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                            >  1:65954‑M1/1‑28 (MQ=255)

                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                        >  1:1101676‑M1/1‑24 (MQ=255)

                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                        >  1:1348961‑M1/1‑24 (MQ=255)

                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                        >  1:3771944‑M1/1‑24 (MQ=255)

                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                        >  1:3042069‑M1/1‑24 (MQ=255)

                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcgatctgttaaaaa                       >  1:3593599‑M1/1‑23 (MQ=255)

                                               cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                     >  1:1962418‑M1/1‑21 (MQ=255)

                                               cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                     >  1:610374‑M1/1‑21 (MQ=255)

                                                 cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagcct                   >  1:1778232‑M1/1‑19 (MQ=255)

                                                   aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                 >  1:3854686‑M1/1‑17 (MQ=255)

                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc              >  1:1751954‑M1/1‑14 (MQ=255)

                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc              >  1:912632‑M1/1‑14 (MQ=255)

                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc              >  1:70598‑M1/1‑14 (MQ=255)

                                                       cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct             <  1:1437735‑M1/68‑56 (MQ=255)

                                                        ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta            >  1:1878599‑M1/1‑12 (MQ=255)

                                                        ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta            >  1:58138‑M1/1‑12 (MQ=255)

                                                         tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac           <  1:721829‑M1/68‑58 (MQ=255)

                                                             aTAAATGtataagtcatanttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta       >  1:3098100‑M1/1‑7 (MQ=255)

                                                             aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta       >  1:2990215‑M1/1‑7 (MQ=255)

                                                             aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta       >  1:205100‑M1/1‑7 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaacgtttttcgctacgctagcacg  >  1:3115628‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:971013‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:746685‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:473136‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:3631358‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:1915260‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:1538010‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag  >  1:1158194‑M1/1‑2 (MQ=255)

                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaac  >  1:81951‑M1/1‑2 (MQ=255)

GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG  >  NC_000913/1978435‑1978568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`