| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,087,406 | 0 | A | C | 52.6% | 8.8 / 29.8 | 19 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| Reads supporting (aligned to +/- strand): ref base A (9/0); new base C (0/10); total (9/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-05 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAAGAGA > NC_000913/2087346‑2087467 | cGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCa > 1:2293312/1‑68 (MQ=255) atcaGTTTTTGCATAAACCCCGGCGATCGCATTATTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTgg < 1:3960982/68‑1 (MQ=255) tttttGCATAACCCCCGGGGATCGCATTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:2479240/67‑1 (MQ=255) tttttGCATAACCCCCGGCGATCGCATTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:3723632/67‑1 (MQ=255) tttttGCAAAACCCCCGGCGATCGCATTATTTGCTAAAATTT‑CACCCCCCCCCCAGCCACTGGCAAGt < 1:2862305/67‑1 (MQ=255) tttttGCAAAAACCCCGGCGAGCCCTTTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:2826606/67‑1 (MQ=255) tttttGAATAACCCCCGGCGATCGCATTTTTTGCTAAAATTT‑CACCCCGCCCCCAGCCACTNGCAAGt < 1:2449169/67‑1 (MQ=255) aTTTTGCATAACCCCCGCCGACCCCACTTTTTGCAAAAATTT‑CCCCCCGCCCCCAGCCACTGGCAAGt < 1:1751210/68‑1 (MQ=255) aTTTTCCATAAACCCGGGCGATCGCATTTTTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGt < 1:1123566/68‑1 (MQ=255) tttGCATAAACACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTcc > 1:4040458/1‑68 (MQ=255) ttccATAACCCCCGGCGATCGCATTATTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCt < 1:3847040/65‑1 (MQ=255) aaaaaCCCGGGCGATCGCCCGTTTTGCTAAAATTC‑CACCCCGCCACCAGCCACTGGCAAGTCCTGCgg < 1:3606196/66‑1 (MQ=255) aTAAACCCCGGCGATCGCATTTTTGGCTAAATTTC‑CACCCCCCCCCCAGCCACTGGCAAGTCCTGCgg < 1:3971523/68‑1 (MQ=255) aTAAACCCCGGCGATCGCATTATTTGCTAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCgg < 1:1159804/68‑1 (MQ=255) acacCGGCGATCGCTTTATTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTg < 1:2550746/68‑1 (MQ=255) cgccGGGGATCGCATTATTGGAAAAATTTC‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:2738904/66‑1 (MQ=255) ccccGGCGCCCGCAGTATTTCCAAAAATTC‑CACCCCCCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:2364926/66‑1 (MQ=255) ccccGGCAATCGCATTTTTTGCAAAATTTT‑CACCCCCCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:1394003/66‑1 (MQ=255) cacCGGCCACCGATCTCTTTGCAAAATTTC‑CCTCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgt < 1:782010/68‑1 (MQ=255) cGGCGATCGCATTTTTTGCAAAATTTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcg < 1:3889566/68‑1 (MQ=255) ggCGATCGCATTTTTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:2959238/68‑1 (MQ=255) ggCGATCGCATTTTTTGCAAAAATTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:2677149/68‑1 (MQ=255) ggCGATCGCATTTTTGGAAAAATTTT‑CACCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:2481381/68‑1 (MQ=255) ggCGATCGCATTATTGTCTAAAAGTT‑CACCCCGCCCCCAGCCACTGGCAAGTCCTGCGGTCTgttcgt < 1:1281453/68‑1 (MQ=255) cGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTgttcgttc > 1:3389556/1‑68 (MQ=255) gCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGcc > 1:3391345/1‑68 (MQ=255) aCTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCaa > 1:567484/1‑68 (MQ=255) ttttttCTAAAATTTCCCCCCCCCCCCCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAAt < 1:1421462/66‑1 (MQ=255) ctttttCTAAAATTTCCCCCCCCCCCCCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAAt < 1:341032/66‑1 (MQ=255) aTTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATcc > 1:782981/1‑68 (MQ=255) tGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATccctg > 1:3039403/1‑65 (MQ=255) cTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACg > 1:1018718/1‑68 (MQ=255) cTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTACGGTCTGTTCGTTCCAGCCAATCCAGACg > 1:2484503/1‑68 (MQ=255) aaatTTC‑CACCCCCCCCCCAGCCACTGGCAAGGCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACggg < 1:814701/68‑1 (MQ=255) ccccccccCAGCGACTGGCAAGTCCGGCGGTCTCTTCGTTCCAGCCAATCCAGACGGGTTCAAagaga < 1:1876468/68‑1 (MQ=255) ccccccccCAGCCCCTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAagaga < 1:3140724/68‑1 (MQ=255) ccccccccCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAagaga < 1:3107747/68‑1 (MQ=255) ccccccccCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAagaga < 1:2360452/68‑1 (MQ=255) | CGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTT‑CATCCCGCCACCAGCCACTGGCAAGTCCTGCGGTCTGTTCGTTCCAGCCAATCCAGACGGGTTCAAAGAGA > NC_000913/2087346‑2087467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |