| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,563,481 | 0 | T | G | 45.2% | 8.7 / 43.1 | 31 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/17); new base G (14/0); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.77e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTCGCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATT > NC_000913/3563417‑3563545 | cGTCGCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCtggt < 1:721997/65‑1 (MQ=255) tCGCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCtggtgg < 1:571923/65‑1 (MQ=255) cGCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCtgggggg > 1:2666709/1‑64 (MQ=255) gCACAAAACAAGGCATGTGGCTAAATGCGGATCAACGATCTCGTGTGAGTCAGTGGCTGGTGGAg < 1:1615422/65‑1 (MQ=255) gCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAg < 1:732742/65‑1 (MQ=255) gCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAg < 1:1399615/65‑1 (MQ=255) gCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAg < 1:1336843/65‑1 (MQ=255) caAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGtat < 1:341747/65‑1 (MQ=255) aaCAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACg < 1:440022/65‑1 (MQ=255) aCAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGgataagg > 1:1023346/1‑62 (MQ=255) aCAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGGTACgc > 1:934694/1‑65 (MQ=255) cAAGGCGTGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACgca < 1:38287/65‑1 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGTATAAGccgcag > 1:3760968/1‑65 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGGTACGcagcag > 1:2471650/1‑65 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATACgcagccg > 1:1864742/1‑63 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAgcggccg > 1:1597246/1‑63 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAGcaggag > 1:2768274/1‑65 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAGcagcag > 1:3531147/1‑65 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAGcaacag > 1:3517255/1‑65 (MQ=255) gCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGAGTATAAAcagcag > 1:2212610/1‑65 (MQ=255) tgtgGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAgg < 1:1988763/65‑1 (MQ=255) tgtgGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAgg < 1:1838558/65‑1 (MQ=255) cagggCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAgg < 1:2205791/62‑1 (MQ=255) gCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAGCAGGAGGGGGTAt > 1:1843454/1‑65 (MQ=255) cTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATc < 1:1927677/65‑1 (MQ=255) tAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATACGCAGAAGGGGGTAttg > 1:2911419/1‑63 (MQ=255) tGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGGGGGGGATACGCACCCGAGGGTTACGCTgg > 1:320630/1‑65 (MQ=255) gATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGcgtc < 1:3105178/65‑1 (MQ=255) acaaTCTCGTGTGAGTCAGTGGCTGGGGGGGGGTACGCAACAGAGGGGATCGCGGGGGCCGTgaa > 1:2624543/1‑65 (MQ=255) caaTCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAAt < 1:82160/65‑1 (MQ=255) aaTCTCGTGTGAGTCAGTGGCTGGGGGGGGATAAGCAGCAGAGGGTATTGCTGGCGTCGGAAAtt > 1:396360/1‑65 (MQ=255) ctcGTGTGAGTCAGTGGCTGGGGGGGGATAACCCGCAGAGGGTATTGCTGGGGTCGTTAATTTAc > 1:3967531/1‑65 (MQ=255) gAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGt < 1:3121486/65‑1 (MQ=255) gAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGt < 1:2165704/65‑1 (MQ=255) gAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGt < 1:1866284/65‑1 (MQ=255) gAGTCAGTGGCTGGGGGGGGATACGGCGCAGAGGTTATTGCTGGGGTCGGAAATTAACATaaagg > 1:3629572/1‑62 (MQ=255) gTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGa < 1:3394169/65‑1 (MQ=255) tGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAgg < 1:742093/65‑1 (MQ=255) tGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAgg < 1:94975/65‑1 (MQ=255) cagCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAgg < 1:2338975/63‑1 (MQ=255) ggtggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGa < 1:2780816/65‑1 (MQ=255) ggtggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGa < 1:3579449/65‑1 (MQ=255) gtggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGAt < 1:2678876/65‑1 (MQ=255) gtggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGAt < 1:1416439/65‑1 (MQ=255) tggAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGAtt < 1:1253379/65‑1 (MQ=255) | CGTCGCACAAAACAAGGCATGTGGCTAAATGCGGATCAACAATCTCGTGTGAGTCAGTGGCTGGTGGAGTATACGCAGCAGAGGTTATCGCTGGCGTCGTAAATTAACGTAAGGTGATCAGGTCAGATT > NC_000913/3563417‑3563545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |