| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 77 [0] | [0] 77 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 70 (2.100) | 27/112 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
GGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC > NC_000913/257844‑257971 | ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa > 1:2671508‑M1/1‑64 (MQ=255) gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGAAag > 1:1729940‑M1/1‑63 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:1137645‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:860275‑M1/1‑62 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:1759959‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:1378912‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:603578‑M1/65‑4 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:350180‑M1/65‑4 (MQ=255) cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:2882730‑M1/1‑61 (MQ=255) cccGAAGAGCAGATCGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca > 1:1643654‑M1/1‑59 (MQ=255) cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 1:1945041‑M1/65‑9 (MQ=255) cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 1:663985‑M1/65‑9 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:2976166‑M1/65‑11 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:2670166‑M1/65‑11 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:2494832‑M1/65‑11 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:1326664‑M1/65‑11 (MQ=255) agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:2650740‑M1/65‑12 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataa > 1:2555511‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:1017776‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2076308‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:1100051‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2604488‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:2471401‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:1758229‑M1/1‑52 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:1164463‑M1/1‑52 (MQ=255) gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:537011‑M1/65‑15 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat < 1:566063‑M1/65‑19 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt > 1:1229260‑M1/1‑46 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct < 1:2783847‑M1/65‑22 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctt < 1:2454620‑M1/65‑23 (MQ=255) aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:1594919‑M1/65‑31 (MQ=255) aTTTACCGCACCAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:778887‑M1/65‑31 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:848806‑M1/65‑33 (MQ=255) ttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:1635217‑M1/65‑33 (MQ=255) gtaCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:2954945‑M1/64‑33 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:1764423‑M1/65‑37 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:25671‑M1/65‑37 (MQ=255) cGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:2143000‑M1/65‑37 (MQ=255) cgctaGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:2576488‑M1/63‑39 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:1993823‑M1/65‑39 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:280918‑M1/65‑39 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:2959168‑M1/65‑39 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:929896‑M1/65‑39 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1072336‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:2278855‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:2013318‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1640473‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1152437‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:191663‑M1/65‑41 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 1:1252259‑M1/65‑41 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:1561494‑M1/65‑43 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc < 1:949911‑M1/65‑45 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc < 1:564608‑M1/65‑45 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc < 1:1566863‑M1/65‑45 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg < 1:2917470‑M1/65‑46 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:1650361‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:1969047‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:2682683‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:689335‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:520415‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:1322179‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg < 1:1496282‑M1/65‑46 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 1:583182‑M1/1‑20 (MQ=255) cccGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctggatggg > 1:2033135‑M1/1‑20 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac > 1:50992‑M1/1‑15 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt > 1:158169‑M1/1‑13 (MQ=255) atTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtgtacgt > 1:331985‑M1/1‑13 (MQ=255) tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga > 1:2496967‑M1/1‑11 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaa > 1:2891885‑M1/1‑10 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaa > 1:250284‑M1/1‑10 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac > 1:116324‑M1/1‑8 (MQ=255) aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg < 1:1401656‑M1/65‑61 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc > 1:2831585‑M1/1‑4 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca < 1:492689‑M1/65‑63 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:6331‑M1/65‑65 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:541449‑M1/65‑65 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc < 1:1294511‑M1/65‑65 (MQ=255) | GGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC > NC_000913/257844‑257971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |