| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 296,504 | 0 | T | G | 46.2% | 1.0 / 15.1 | 13 | N198T (AAC→ACC) | intF | CP4‑6 prophage; putative phage integrase |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (6/0); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.10e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTCC > NC_000913/296442‑296568 | tttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTg > 1:2300226/1‑65 (MQ=255)tttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTg > 1:1037226/1‑65 (MQ=255) ttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGa < 1:952537/65‑1 (MQ=255) ttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGa < 1:915214/65‑1 (MQ=255) ttGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGa < 1:1489095/65‑1 (MQ=255) cTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCaa < 1:2236479/65‑1 (MQ=255) cTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCaa < 1:2856918/65‑1 (MQ=255) aCTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAACTAGCCa > 1:1495226/1‑65 (MQ=255) aCTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGCAAACTAGccc > 1:1852421/1‑64 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAATAGCCaaa > 1:1702784/1‑64 (MQ=255) tCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAAAAACCAAt > 1:1484073/1‑65 (MQ=255) cACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAACCAGGCAAAgggtc > 1:1680736/1‑62 (MQ=255) aCGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAACAAGCCAATGGGCCa > 1:233347/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAACAAGCCAATGGGCCAGCCGAAGCCg > 1:304778/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGTGAGCAAAATAGCCCAAGGGCCCGCCGAAGGCg > 1:2766215/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGGGGGGAAACTAGCCCATGGGCCAGCCGCAgacc > 1:1950142/1‑62 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGGGGGGAAACTAGCCAAAGGGCCAGCCGCAGTCg > 1:1874322/1‑65 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGGGGGCAAACTAACCAATGGGCCACCCGAAggcc > 1:1886018/1‑62 (MQ=255) gTAATCTGGGGTTAGCTCCGATAACGGCAGGGGGGGCAAAATACCCAATGGTCCCGCCGAAgcgg > 1:388987/1‑62 (MQ=255) aaTCTGGGGTTAGCTCCGATAACGGCAGGGTGGGGAAAATAGCCAATGGGCCCGCCGGAGGCggg > 1:752681/1‑65 (MQ=255) ggTTAGCTCCGATAACGGCAGGGGGAGGAAAATAGCCAAAGGTCCAGCCGGAGGCGGGGCTTggg > 1:587496/1‑64 (MQ=255) tCCGATAACGGCAGGGTGGGCAAACTAGCCAATGGTCCAGCCGCAGGCGGGGCCTGGCCTCtttt > 1:147368/1‑65 (MQ=255) tCCGATAACGGCAGGGTGGGCAAAATAGCCAATGGGCCAGCCGAAGTCGGGGCTTGGCCTCtttt > 1:1333478/1‑65 (MQ=255) tCCGATAACGGCAGGGTGGGCAAAACAGCCCAAGGTCCAGCCGAAGGGCGGGCTTGGTCTCtctt > 1:498522/1‑65 (MQ=255) ggTTGAACAAACTAGCCAATGTTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCt < 1:1848638/65‑1 (MQ=255) gTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTc > 1:2664361/1‑65 (MQ=255) gTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTc > 1:2949671/1‑65 (MQ=255) ttGAGCAAACTAGCCAATGGGCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTTCTTTTGCCTcc > 1:1772728/1‑65 (MQ=255) | TTTGCCTTTCTGTACTCAGCCACGCTGCTATGTAATCTGGGGTTAGCTCCGATAACGGCAGGTTGAGCAAACTAGCCAATGGTCCAGCCGAAGTCGGGCCTTGGCCTCTTTTTTTACTTTCGCCTCC > NC_000913/296442‑296568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |