| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,280,704 | 0 | A | C | 52.4% | ‑2.4 / 35.4 | 21 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| Reads supporting (aligned to +/- strand): ref base A (9/1); new base C (0/11); total (9/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.40e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.23e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGG > NC_000913/2280642‑2280764 | cacTACGCCCATATCAGAAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAcc < 1:1180829/65‑1 (MQ=255) acTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAccc > 1:1396649/1‑65 (MQ=255) cagatCAACAAGACGCCGGGGATGCCACGCTCAACCATTTGCGTCGTCAAAAACCCCCTGCCGtt < 1:755076/62‑1 (MQ=255) aatagCAGCAAGAAGCTGTGGATGCCACGCTAAACCTTTTGCGTCGTCAAAAACCCCCTGCCGtt < 1:1012549/64‑1 (MQ=255) cAGAAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGt < 1:415135/65‑1 (MQ=255) cAAGAAGCCGTGGAGGCCCCGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGtgct < 1:2668438/65‑1 (MQ=255) aagaagCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGtgctg > 1:954096/1‑65 (MQ=255) agaagCCGTGGATGCCCCGCTCACCCATTTCCGTCGTCATAAACCCCCTGCCGTTATCGtgctgc < 1:3695775/65‑1 (MQ=255) agaagCCGTGGATGCCACGCTCACCCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGtgctgc < 1:3549967/65‑1 (MQ=255) aaaagCCGTGGATCCCACGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGtgctgc < 1:991188/63‑1 (MQ=255) gagCCGTGAACGCGCCCCTCAGCCTTTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGccc < 1:3415312/64‑1 (MQ=255) gCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCAc > 1:3819189/1‑65 (MQ=255) cGTGGATGCCACGCTCACCCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCg < 1:339178/65‑1 (MQ=255) tGGATGCCACGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGgc < 1:3865031/65‑1 (MQ=255) tGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGgc > 1:3298716/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:2979729/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:2846995/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:1870868/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:3734852/1‑65 (MQ=255) gCCACGCTCACCCATTTTCGTCTTAATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAgg < 1:3063539/65‑1 (MQ=255) ccgcGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGt < 1:3769656/62‑1 (MQ=255) ccACCCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGt < 1:1997086/65‑1 (MQ=255) gtCAACCAGTTTCGCCGCCAAAAGCCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:2818621/64‑1 (MQ=255) cTCATCCATGTGCCTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:2910041/65‑1 (MQ=255) cTCACCCATTTTCCTCGTCAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:2448065/65‑1 (MQ=255) cTCAACTATCTTCGCCGTCATAACCCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:2381947/65‑1 (MQ=255) tCACCCTTTTCCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGc < 1:2228880/65‑1 (MQ=255) ccAACTATTTCCGTCGTAAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGc < 1:1362781/64‑1 (MQ=255) aTTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTg > 1:195256/1‑65 (MQ=255) cgtcgtCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGc < 1:3416488/65‑1 (MQ=255) cgtcATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGa < 1:129493/65‑1 (MQ=255) aaaacCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTgg < 1:603456/64‑1 (MQ=255) | CACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGG > NC_000913/2280642‑2280764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |