| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,812,386 | 0 | C | A | 25.0% | 52.6 / 12.9 | 24 | L58F (TTG→TTT) | yicR | RadC‑like JAB domain‑containing protein YicR |
| Reads supporting (aligned to +/- strand): ref base C (18/0); new base A (0/6); total (18/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCTTTACCG > NC_000913/3812322‑3812449 | aCTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAAc > 1:1790373/1‑65 (MQ=255)aCTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAAc > 1:2506953/1‑65 (MQ=255)aCTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAAc > 1:2571250/1‑65 (MQ=255)aCTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAAc > 1:2054495/1‑65 (MQ=255) ccacgccaATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAagagag > 1:1894909/1‑65 (MQ=255) caaaTCCCATGAACGCCACTAAATTTTTC‑ATATTCAGAGTTAAAAAAGCCATAAAGAGAGCCGaa < 1:3664331/63‑1 (MQ=255) tCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATtct > 1:3864103/1‑65 (MQ=255) tCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATtct > 1:60302/1‑65 (MQ=255) tCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATtct > 1:271298/1‑65 (MQ=255) tCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATtct > 1:1550111/1‑65 (MQ=255) tCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATtct > 1:750822/1‑65 (MQ=255) tGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAg > 1:1623022/1‑65 (MQ=255) tGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAg > 1:342303/1‑65 (MQ=255) ccatAAATTNTTCAATTTTAAGAATTAAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCAtctc < 1:3128869/62‑1 (MQ=255) aTTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGcc > 1:3619399/1‑65 (MQ=255) aTTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGcc > 1:1343537/1‑65 (MQ=255) aTTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGcc > 1:3142435/1‑65 (MQ=255) aTTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGcc > 1:2120175/1‑65 (MQ=255) aatC‑ATATCGAGAGGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAgg < 1:2006472/63‑1 (MQ=255) ttC‑TTATTCAGATGTAAAAAAGCCATAAAGAGAGCCGAAAGTCTCCAGCATCTCTTTTGCCAggg < 1:1716661/65‑1 (MQ=255) ttC‑ATATTGAGAGGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAggg < 1:923795/65‑1 (MQ=255) ttC‑ATATTAAGAGTTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAggg < 1:2475482/65‑1 (MQ=255) tttatatTCAGAGTTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAggg < 1:1769689/62‑1 (MQ=255) taaatatACAGATGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAggg < 1:2991610/62‑1 (MQ=255) tC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGt > 1:671460/1‑65 (MQ=255) tC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGt > 1:352895/1‑65 (MQ=255) tC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGt > 1:1740149/1‑65 (MQ=255) atatTCAGAGATAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTa < 1:1215160/65‑1 (MQ=255) cAGAGGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACa < 1:2107852/65‑1 (MQ=255) cAGAGGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACa < 1:3698752/65‑1 (MQ=255) aagatGTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACa < 1:2757510/64‑1 (MQ=255) aagagTTAAAAAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACa < 1:179429/64‑1 (MQ=255) ggTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCtt > 1:3393078/1‑65 (MQ=255) ggTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCtt > 1:2097466/1‑65 (MQ=255) aCAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCTTTACcg > 1:160365/1‑65 (MQ=255) aCAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCTTTACcg > 1:2411923/1‑65 (MQ=255) | ACTGGGCAAATTTCGCCACGCCAATTCCATGAACGCCACTAAATTGTTC‑ATATTCAGAGGTTAACAAGCCATAAAGAGAGCCGAAATTCTCCAGCATCTCTTTTGCCAGGGTTAATACATCTTTACCG > NC_000913/3812322‑3812449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |