New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	54 (1.300)	31/120	0.0	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACA  >  NC_000913/1300635‑1300762                                                                |                                                                 ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                                 <  1:3024606‑M2/2‑1 (MQ=255)  tgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                <  1:1060645‑M2/3‑1 (MQ=255)   gctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataa                                                               <  1:2132984‑M2/4‑1 (MQ=255)    ctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataat                                                              <  1:224692‑M2/5‑1 (MQ=255)      gaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataa                                                            <  1:1809678‑M2/7‑1 (MQ=255)          aataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCaa                                                        >  1:2070297‑M2/55‑65 (MQ=255)          aataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCaa                                                        >  1:3447795‑M2/55‑65 (MQ=255)           ataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAAt                                                       >  1:2747719‑M2/54‑65 (MQ=255)              attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGt                                                    <  1:3089153‑M2/15‑1 (MQ=255)                tgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                  >  1:343029‑M2/49‑65 (MQ=255)                    atgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                              <  1:1410760‑M2/21‑1 (MQ=255)                     tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                             >  1:589599‑M2/44‑65 (MQ=255)                     tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                             >  1:1123803‑M2/44‑65 (MQ=255)                        tattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtg                                          >  1:2711209‑M2/41‑65 (MQ=255)                         attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                         <  1:1217601‑M2/26‑1 (MQ=255)                         attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                         <  1:364036‑M2/26‑1 (MQ=255)                           tattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGc                                       <  1:553133‑M2/28‑1 (MQ=255)                            attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCa                                      <  1:1796177‑M2/29‑1 (MQ=255)                             ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAt                                     >  1:2604716‑M2/36‑65 (MQ=255)                              taattccactgcctttggtaggggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:1705911‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:1804889‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:530141‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:2040177‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:70779‑M2/31‑1 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  <  1:265362‑M2/33‑1 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  >  1:2372793‑M2/33‑65 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  >  1:988082‑M2/33‑65 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  <  1:1720095‑M2/33‑1 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  <  1:2151141‑M2/33‑1 (MQ=255)                                attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                  <  1:2198417‑M2/33‑1 (MQ=255)                                  tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCac                                >  1:3404613‑M2/31‑65 (MQ=255)                                    cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCacta                              <  1:3472869‑M2/37‑1 (MQ=255)                                     actgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactac                             >  1:117919‑M2/28‑65 (MQ=255)                                      ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTGTTGTGCATTTCactact                            <  1:1051570‑M2/39‑1 (MQ=255)                                      ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                            <  1:2083799‑M2/39‑1 (MQ=255)                                      ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                            <  1:1603797‑M2/39‑1 (MQ=255)                                      ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                            <  1:3080947‑M2/39‑1 (MQ=255)                                      ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                            <  1:801544‑M2/39‑1 (MQ=255)                                         cctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGa                         <  1:2958223‑M2/42‑1 (MQ=255)                                          ctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGaa                        >  1:983695‑M2/23‑65 (MQ=255)                                             tggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTg                     <  1:3122236‑M2/46‑1 (MQ=255)                                               gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTa                   >  1:1291752‑M2/18‑65 (MQ=255)                                               gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTa                   >  1:1809781‑M2/18‑65 (MQ=255)                                                tagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTaa                  <  1:336868‑M2/49‑1 (MQ=255)                                                tagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTaa                  <  1:3299282‑M2/49‑1 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:2054511‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:2182685‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:480270‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:785568‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGAGCATTTCACTACTGGAACTGTAATCAGaa            >  1:3290628‑M2/11‑65 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:3005871‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:284623‑M2/58‑1 (MQ=255)                                                           gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAt       >  1:1066994‑M2/6‑65 (MQ=255)                                                           gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAt       >  1:3234658‑M2/6‑65 (MQ=255)                                                             taaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAg     <  1:1959189‑M2/62‑1 (MQ=255)                                                              aaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa    <  1:141383‑M2/63‑1 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:1523359/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:421459/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:1855899/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:1880836/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2685239/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2567268/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2467378/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2304929/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2213305/1‑65 (MQ=255)                                                                |                                                                 TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACA  >  NC_000913/1300635‑1300762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.