| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,280,704 | 0 | A | C | 44.4% | 9.1 / 12.7 | 18 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| Reads supporting (aligned to +/- strand): ref base A (9/1); new base C (0/8); total (9/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.11e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGG > NC_000913/2280643‑2280764 | acTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAAccc > 1:2479078/1‑65 (MQ=255) tatCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTag > 1:3010042/1‑64 (MQ=255) tCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCg > 1:2893413/1‑65 (MQ=255) cAGCAAAAGGCCGTGGATGCCCCGCCCACCCATTTACGTCGTCAAAAACCCCCTGCCGTTATCGt < 1:588197/65‑1 (MQ=255) aaacAAAAAGCCGTGGATGCCACGCTCAACCTTTTTCGTCTTCATAAACCCCCTGCCGTTATCGt < 1:2749893/62‑1 (MQ=255) cAAGAGGCCGTGGATCCCCCGCTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGtgct < 1:1219778/65‑1 (MQ=255) agcagCCGTCGCTCCCCCGCCCACCCATTTTCCTCCTCATAAAACCCCTGCCGTTATGGtgctgc < 1:3233003/62‑1 (MQ=255) aaaagCCGTGGATGCCGCGCTCAACCTTTTTCGTCCTCAAAAACCCCCTGCCGTTATCGtgctgc < 1:2774205/63‑1 (MQ=255) aaaagCCGTGGATGCCCCTCTCAACCTTTTTCGTCGTCATAAAACCCCTGCCGTTATCGtgctgc < 1:3172659/63‑1 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:1151241/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:537839/1‑65 (MQ=255) aTGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCa > 1:2871541/1‑65 (MQ=255) gCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAgg > 1:986281/1‑65 (MQ=255) gCCACCCTCAACCTTTTTCGTCGTCAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAgg < 1:984623/65‑1 (MQ=255) ccACGCTCACCCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGt < 1:58525/65‑1 (MQ=255) ccACGCTCACCCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGt < 1:1284085/65‑1 (MQ=255) cccGCTCACCCATTTGCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTa < 1:124971/63‑1 (MQ=255) cGCTAAACCTTTTTCGTCGTAATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTaaa < 1:1565617/65‑1 (MQ=255) gCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCGACCGGCGCAGGGaaaa > 1:2561748/1‑65 (MQ=255) cTCACCCTTTTTCGTCTTAAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:1969939/65‑1 (MQ=255) cTCAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg < 1:1737933/65‑1 (MQ=255) cTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAg > 1:2426387/1‑65 (MQ=255) cAACCATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGcc < 1:2413926/65‑1 (MQ=255) acccATTTCCGTCGTCAAAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCt < 1:775250/63‑1 (MQ=255) aCCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCATGTAAAAGcccg > 1:2431020/1‑63 (MQ=255) aCCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTg > 1:3446130/1‑65 (MQ=255) ccttttcCGTCATAATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTgg < 1:2255137/62‑1 (MQ=255) ccATTTTCGTCTTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTgg < 1:1201535/65‑1 (MQ=255) ccATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGccctg > 1:1759700/1‑62 (MQ=255) cATTTTCGTCGTCATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGt < 1:3171132/65‑1 (MQ=255) cgtcATAAACCCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGa < 1:3245188/65‑1 (MQ=255) tAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTgg < 1:1539234/65‑1 (MQ=255) | ACTTCGCCCATATCAGCAAGAAGCCGTGGATGCCACGCTCAACCATTTTCGTCGTCATAAAACCCCTGCCGTTATCGTGCTGCCCACCGGCGCAGGTAAAAGCCTGGTGATAGCGGAACTGG > NC_000913/2280643‑2280764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |