| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 51 (1.220) | 8 (0.220) | 8/110 | 1.1 | 13.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 55 (1.540) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAA > NC_000913/4542618‑4542745 | actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:819678‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:709345‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2793398‑M1/1‑1 (MQ=255)actttgttttgtaaacgagtttgactgccaacactgcacagctttcccccaaaagatgaaacatt < 1:2140090‑M1/1‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:2077684‑M1/2‑1 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt > 1:1188546/1‑65 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt > 1:1224729/1‑65 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt > 1:2945398/1‑65 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:2269873‑M1/4‑1 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:1442218‑M1/61‑65 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTggg < 1:326278/65‑1 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:2286853‑M1/6‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCat < 1:2313446/65‑2 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1483128/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1704750/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2682774/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:255927/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:2337007/1‑65 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1335815/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:481425/65‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:110998/1‑65 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:2409508‑M1/11‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:2991102/1‑65 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:1192843/1‑65 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:2363622/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:2792073/65‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATGGGGGCCAAACTGt < 1:2678342/65‑1 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:1936947‑M1/51‑65 (MQ=255) aaTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:1394352/64‑1 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:1962517/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:2402558/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:2986385/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:297477/1‑65 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc > 1:1613491/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:299509/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:3080309/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:2912340/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:410586/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:1257065/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:2747950/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:112946/1‑65 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:890057/1‑65 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat < 1:578592‑M1/24‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:727873/1‑65 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:10431/1‑65 (MQ=255) gccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:3063096‑M1/39‑65 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata > 1:2469873/1‑65 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:2745847‑M1/34‑1 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt > 1:3152614/1‑65 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:1865077‑M1/38‑1 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:1509034‑M1/43‑1 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:442253‑M1/48‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:951866/65‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:1702218/1‑65 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa < 1:1706340/65‑1 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:68245/1‑65 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:1158121/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:998990/65‑1 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:286424/1‑65 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:780298/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:510774/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:2824727/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:407075/1‑65 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:203740/1‑65 (MQ=255) aCAATTAGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:1466116/1‑65 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:776984/1‑65 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:368642/1‑65 (MQ=255) | AAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAA > NC_000913/4542618‑4542745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |