| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 65 [0] | [0] 65 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 58 (1.590) | 19/112 | 0.2 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACC > NC_000913/258620‑258747 | ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa > 1:116078‑M2/65‑65 (MQ=255) acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:514729‑M2/3‑1 (MQ=255) acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:1788877‑M2/3‑1 (MQ=255) acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:271396‑M2/3‑1 (MQ=255) acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt > 1:3048506‑M2/63‑65 (MQ=255) gaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg > 1:954245‑M2/57‑65 (MQ=255) agagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:224577‑M2/11‑1 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtggaggtaAGTGCAaagactg > 1:1636675‑M2/53‑62 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAaagactg > 1:2359324‑M2/53‑62 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:1399997‑M2/53‑65 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:243551‑M2/53‑65 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:2160204‑M2/53‑65 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:462790‑M2/53‑65 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:735513‑M2/53‑65 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg > 1:2059631‑M2/50‑65 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg > 1:1731918‑M2/50‑65 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt > 1:486951‑M2/47‑65 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt > 1:1876909‑M2/47‑65 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt > 1:1097889‑M2/47‑65 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa > 1:782885‑M2/38‑65 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:1704321‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:342680‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:1525427‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:24643‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:13759‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:101268‑M2/32‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:216538‑M2/36‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:1838137‑M2/36‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:852118‑M2/36‑1 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc < 1:207894‑M2/37‑1 (MQ=255) ctaggcgcgtatattcgtgaaggtaAGTGCGAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:1192427‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:1926875‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:2816219‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:1323901‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:312097‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:747193‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:1729134‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:177077‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:1997060‑M2/40‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTACAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:142740‑M2/40‑1 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 1:1538952‑M2/22‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:406281‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:816930‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:3108340‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:1019024‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:676902‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:274606‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:1435339‑M2/21‑65 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg < 1:2268471‑M2/45‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:1619989‑M2/21‑65 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa > 1:2814692‑M2/17‑65 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:2510924‑M2/51‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:928470‑M2/51‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:1570183‑M2/51‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:2139670‑M2/51‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:1698522‑M2/51‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:1628535‑M2/51‑1 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaa > 1:1899228‑M2/11‑65 (MQ=255) aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 1:96851‑M2/60‑1 (MQ=255) aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 1:2419362‑M2/60‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa < 1:1997487‑M2/62‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa < 1:2349119‑M2/62‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa > 1:1026959‑M2/4‑65 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa < 1:2618019‑M2/62‑1 (MQ=255) aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAcc < 1:2473834‑M2/64‑1 (MQ=255) | CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACC > NC_000913/258620‑258747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |